barSeed - Barley Seed Development Database

Probe CUST_41200_PI390587928

Source Contig U35_32130

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41200_PI390587928	Hv_44K_v2	AAGGCCACGAGAGTTCAGCCAGGAGGAAGCCATTGACCATTGTTGCCATCGACCGATCCT	25	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357284	1911	2e-24	150 - 209	100	60 / 60	plus	ABC09397 ABC14823 ABC30335 ABC39577
MLOC	MLOC_44749.1	398	2e-24	115 - 174	100	60 / 60	plus	ABC09397
JLOC1	JLOC1_29022.1	350	8e-25	67 - 126	100	60 / 60	plus
Harvest35	U35_32130	399	3e-25	26 - 85	100	60 / 60	plus

Contig Sequence (399 bp)

>U35_32130 399 Hv_44K_v2
AATTCACATCGATCCCAAGCTAACCAAGGCCACGAGAGTTCAGCCAGGAGGAAGCCATTG
ACCATTGTTGCCATCGACCGATCCTGACCAGCTCGAAGCGCACGGAGGGCAAGAAGAAGT
CGTCTGCGGAGGAGATGGGATCGACGGGACCTGCCGCCGGGAAGCCGCACGCGGTGTGCC
TGCCGTACCCGGCGCAGGGGCACATCACGCCGATGCTCAACGTGGCCAAGCTGCTCCACG
CCCGGGGCTTCGACGTCACCTTCGTCAACACCGAGTACAACCACGCACGCCTCGTCCGCT
CCCGCGGCGCCGCCGCCGTGGCCGGCCTCCCGGGCTTCCGCTTCGCCACCATCCCCGACG
GCCTGCCGCCGTCCGAAGACGACGACGTCACGCAGGACA

Homology of Contig U35_32130 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None