barSeed - Barley Seed Development Database

Probe CUST_411_PI415269222

Source Contig BE412589

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_411_PI415269222	Hv_44K_v2	ATCAAGATGGCAGGGGCCAAGAAGACGATCGAGGTGGGCGTGTTCACGGGCTACTCGCTG	277	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70730.1	1222	2e-24	482 - 541	100	60 / 60	plus	ABC00406 ABC00606
JLOC1	JLOC1_46952.1	1402	8e-25	385 - 444	100	60 / 60	plus
Harvest21	ABC35044	472	3e-25	221 - 280	100	60 / 60	plus
Harvest21	ABC00406	1363	3e-25	291 - 350	100	60 / 60	plus	ABC00406
Harvest35	U35_14101	1164	3e-25	320 - 379	100	60 / 60	plus

Contig Sequence (907 bp)

>BE412589 907 Hv_44K_v2
GCCCTACCCTGCTACCCAGGCACCACCAACCCAGGCAGAGCTAGCGACCAGAGCCATGGC
GCCCAGCGGAGACAACACCGTGGCCAACGTCCACAGCGGCATCGACAGCACCAACAAGAC
GCTGCTCAAGAGCGACGCCCTCTACACCTACATCCTCGACACCACCGTGTTCCCCCGCGA
GCACGAGTGCATGCGCGACCTGCGCCTCATCACCGACAAGCACCCCTGGGGTTACATGCA
GTCGTCCTCGGACGAGGCGCAGCTGCTGGGGATGCTGATCAAGATGGCAGGGGCCAAGAA
GACGATCGAGGTGGGCGTGTTCACGGGCTACTCGCTGCTGGCCACCGCGCTGGCGCTCCC
CGAGGACGGCAAGATCGTGGCCATCGACACCGACCGTGAGTGCTACGAGGTGGGCCGCCC
CTTCATCGAGAAGGCCGGCATGGCGCACAAGGTGGACTTCCGCGAGGGCACCGGCCTGGA
GCGCCTGGAGGAGCTCCTCGCCGAGGACGATGGCGCGGCCAGCTACGACTTCGCGTTCGT
GGACGCCGACAAGCCCAACTACGTGCGCTACCACGAGCAGCTGCTGCGGCTGGTGCGCGT
CGGCGGCACCATCATCTACGACAACACGCTCTGGGGCGGCACGGTGGCGCTGCCGGCGGG
CACGCCCTTGTCCGACCTCGACACCCGCTTCTCCGCCGCCCTCAGGGACCTCAACGCCAA
GCTCGCCGCCGACCCGCGCATCGAGGTCTGCCAGCTCGCCATCGCCGACGGCGTCACCAT
CTGCCGCCGCGTCGTCTANACGGCGTCCGGTCAGGGTNCGGCGTGAAAGCATCGGGAATC
CGCCGNGCGTGGGAGTCGATTTCGTTNCTTACCAAGCCCGCTTTCCCTTTAATCAAATTG
GAATTAT

Homology of Contig BE412589 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g38900.1	253	6e-128	protein\|caffeoyl-CoA O-methyltransferase, putative, expressed
Brachypodium v1_2	Bradi3g39420.1	245	6e-135
Arabidopsis v10	AT4G34050.1	259	3e-85	\| Symbols: CCoAOMT1 \| S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr4:16310844-16311973 FORWARD LENGTH=259