barSeed - Barley Seed Development Database

Probe CUST_41181_PI390587928

Source Contig U35_20169

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41181_PI390587928	Hv_44K_v2	GTTTGCTTAGTTGGTTGGGTGCTAGTGAACTATATGTTCAAAAGATAAATGGATGAGTAT	975	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.111	1.357	1.236	0.751	0.352	0.407
Raw	67.905	127.910	104.766	104.543	16.339	20.714

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC12300	1307	3e-25	976 - 1035	100	60 / 60	plus	ABC12300
Harvest35	U35_20169	1307	3e-25	976 - 1035	100	60 / 60	plus

Contig Sequence (1307 bp)

>U35_20169 1307 Hv_44K_v2
GCTTCCTCATCTCCTACTCTGATTCAGCGGACGCCCGGCGGCCGGGGACCGAGATCCACT
GCCTTGGTGTGGCCAAGTCACCATGTGCCTTGCCCTCTACCATCCAGCGTCCAAATCAAT
CGCTGCTAGCCATGGGATTAATTTGAACGATGGATGCAGGGGCACGAGGCACGCCGTGAC
CCGGCTCTGTCGAGGCATGGGATCTTAGTCCGGCGGGCGGTGGCGGAAGCATCACCATGA
GCCGAGCAAGCAGATATGTCACAGACAAGAATCTCTATAAGTATTTGAAGCATCTTTCCT
ATCGAATGTTGTAAATACATCTTTATGATGCCAGGGCTACTGACAACCAGTTCAAGTTAA
GTTGCTTGATCTCCACTCCAGTTGGACCGGTTAGTTGATTACAGATTTGAGGATGCCAGT
TATTCTGTAATTTGCAGGGACCTCCAGATCTTTTTGGCTCTCGAGTCCATACTTCAAAGT
TAAACCCAGGACTAACATAGTTTGGTGAGGTGATTATGAAGAGAGTATGATGAAACAATT
ATAATAGCCAGAATTGATTATTCATTGATTGAGCAGAGGAGGCAACTTATTACTCTCTGA
CATCAACGACGTGGAGATCATTATCAGTTGGTAGATGTGATCCGGTTCTATGTAGACTGT
CCTGACTGCTCGGCCACATAATGTGTGAAAAGGGGGCCAAAAAAACAAAAACGAGATATG
TAATGATGCCAACAAAATAACTACTAATGATGAAGAAGGCTTCATAGATTGTGATGATGT
TGGTGCAGATGAAAATGAAGATGCTGAAAATGCAAAAACAAACGGGTGCAAGTAGTGGAA
GCTGAAATATATTTGGAACCTTCCAAAAGAGAATAGGATAATGGTTCGCAGCAATGACCT
TCCAAATATTTTTTTGCACACAAGACCGAGAAAACAACAAAAGGTGCTAATGCAGCTATC
AGACTGCTCAAGGTGGTTTGCTTAGTTGGTTGGGTGCTAGTGAACTATATGTTCAAAAGA
TAAATGGATGAGTATATATGGGTGGGTGGCAAGTATACTTCAATGAGGATGTTGATTTTC
TGGATCATGGTGATGATGATGGATGATTTCAGTTTTATTTAAGTAGTAGGGATGTCGTTC
CCGTTGGATGTTGTTTGTCGGTCTTGTTTTGGTTAAGTTGTAGGGATGTTGATGGATGCT
TTCAGTTTAAGTTTCACTGGCAAGAAAATAGTTAGATTATGCATCACATTTGGATGATGT
TCCTCATGTAATTTCCAATATTGTAATCTAACATTTTTATGTAATAT

Homology of Contig U35_20169 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None