barSeed - Barley Seed Development Database

Probe CUST_41157_PI390587928

Source Contig U35_20178

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41157_PI390587928	Hv_44K_v2	CCCACGTCGTTTCTGGTCCACTCTGGTTAATTAATTATCTGTTAAGATTGAATTTTTACT	547	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362030	1528	2e-24	1384 - 1443	100	60 / 60	plus	ABC07362 ABC08966 ABC09216 ABC18504
MLOC	MLOC_17950.1	797	2e-24	388 - 447	100	60 / 60	plus	ABC18504
JLOC1	JLOC1_12406.1	633	8e-25	404 - 463	100	60 / 60	plus
Harvest21	ABC18505	672	3e-25	66 - 125	100	60 / 60	minus
Harvest21	ABC18504	623	1e-23	69 - 125	100	57 / 57	minus	ABC18504
Harvest35	U35_20178	709	3e-25	548 - 607	100	60 / 60	plus

Contig Sequence (709 bp)

>U35_20178 709 Hv_44K_v2
TACGTGCACGTCTCGCAGACCTGCCGCCACCTGCTCTCCCGGATCTTCGTCGCCGACCCG
CGCAAGCGCATCACCATGGCCGAGATCAAGGCGCACCCATGGTTCCTCAAGAACCTGCCA
AGGGAGCTCAAGGAGGAGGCGCAGCAGGCCTACTACAACCGCCGGCACGTCGACGTCGTC
GCTCCCTCCTCGAATAATGGCACCGGCGCCGGCGCCGGTGCCTCCTCGAATGGTGCCGCG
GCGGCGGTGACCGCGCCCGCGCCGGCATACTCGGCGCAGAGCGTGGAGGAGATCATGAAG
ATCGTGCAGGAGGCGCAGACGGTGCCCAAGCCCGACAAGCCGGTGACAGGGTACGGCTGG
GGCACCGGCGACGGCGAGGCCTCCGACGAGGACGACGGCAACCAGGAGGGGGAGGAGGAG
GAGGAGTACGGCGAGGACGAGTATGACCGGACGGTGAGGGAGGTGCACGCCAGCGGAGAC
TTCGGCATGAGCAAGCTCCAAATCTGACGTCAATTGCTTCTCACCACATGGCGCCGGCCA
TTGCTCCCCCACGTCGTTTCTGGTCCACTCTGGTTAATTAATTATCTGTTAAGATTGAAT
TTTTACTTTTTGTCAATTGTAACAAATTAGCTAATTAACATTGTCTTTTTTGCTCAAAAA
AAAAAAAAAAAATGGAATGGATTATTGCTTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_20178 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None