barSeed - Barley Seed Development Database

Probe CUST_41143_PI390587928

Source Contig U35_44139

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41143_PI390587928	Hv_44K_v2	TTTTCCTAGATCTAAAGCTGCGCTAAGTACCGAGGTAAACTCAGAAGTCCCTAAACCTGG	248	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51141.12	6460	7e-23	3673 - 3732	98	59 / 60	minus	ABC08959 ABC41656
MLOC	MLOC_51141.5	7201	7e-23	4413 - 4472	98	59 / 60	minus	ABC08959 ABC41656 ABC47652
MLOC	MLOC_51141.11	6622	7e-23	3834 - 3893	98	59 / 60	minus	ABC08959 ABC41656 ABC47652
MLOC	MLOC_51141.7	6871	7e-23	4083 - 4142	98	59 / 60	minus	ABC08959 ABC41656 ABC47652
MLOC	MLOC_51141.8	7002	7e-23	4214 - 4273	98	59 / 60	minus	ABC08959 ABC41656 ABC47652
MLOC	MLOC_51141.9	7007	7e-23	4219 - 4278	98	59 / 60	minus	ABC08959 ABC41656 ABC47652
MLOC	MLOC_51141.6	6944	7e-23	4156 - 4215	98	59 / 60	minus	ABC08959 ABC41656 ABC47652
MLOC	MLOC_51141.10	4283	7e-23	3849 - 3908	98	59 / 60	minus	ABC08959 ABC41656 ABC47652
JLOC1	JLOC1_32644.3	6930	4e-23	2730 - 2789	98	59 / 60	plus
JLOC1	JLOC1_32644.2	6724	4e-23	2521 - 2580	98	59 / 60	plus
JLOC1	JLOC1_32644.1	6625	4e-23	2719 - 2778	98	59 / 60	plus
Harvest21	ABC41655	324	3e-25	249 - 308	100	60 / 60	plus
Harvest35	U35_44139	324	3e-25	249 - 308	100	60 / 60	plus

Contig Sequence (324 bp)

>U35_44139 324 Hv_44K_v2
CAGCAAGAAGGTGGACAGGAGGGTATGTCTGTGCTTCATAGCAACCTAACTGAACAATCC
GAGGACAAAAAAGACCCTACAGCCTCAGCTGGTGCTTTCCCTAGTTCGGAAGATTGCTCT
GCCAGAAATATAAAACATACCCTTACTTCTGCGGAGACAAATACAACAGGAGATGATAGA
AGTTTCTCATTTGAGGTCGGAAATCCACCAAAGGTGTCTGAGAAAGTTCATCGTCCTGCT
TGGAGCCCTTTTCCTAGATCTAAAGCTGCGCTAAGTACCGAGGTAAACTCAGAAGTCCCT
AAACCTGGGACTCCTGGAAATGTG

Homology of Contig U35_44139 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None