barSeed - Barley Seed Development Database

Probe CUST_41128_PI390587928

Source Contig U35_44140

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41128_PI390587928	Hv_44K_v2	TTAGCAGTTGTACAGGAGGAGAAACAGAAGACACCGGCTTTTAAGCGTAATAGAGCTGGA	34	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51141.12	6460	7e-23	2727 - 2786	98	59 / 60	minus	ABC08959 ABC41656
MLOC	MLOC_51141.5	7201	7e-23	3371 - 3430	98	59 / 60	minus	ABC08959 ABC41656 ABC47652
MLOC	MLOC_51141.11	6622	7e-23	2888 - 2947	98	59 / 60	minus	ABC08959 ABC41656 ABC47652
MLOC	MLOC_51141.7	6871	7e-23	3140 - 3199	98	59 / 60	minus	ABC08959 ABC41656 ABC47652
MLOC	MLOC_51141.8	7002	7e-23	3172 - 3231	98	59 / 60	minus	ABC08959 ABC41656 ABC47652
MLOC	MLOC_51141.9	7007	7e-23	3177 - 3236	98	59 / 60	minus	ABC08959 ABC41656 ABC47652
MLOC	MLOC_51141.6	6944	7e-23	3210 - 3269	98	59 / 60	minus	ABC08959 ABC41656 ABC47652
MLOC	MLOC_51141.10	4283	7e-23	2903 - 2962	98	59 / 60	minus	ABC08959 ABC41656 ABC47652
JLOC1	JLOC1_32644.3	6930	4e-23	3673 - 3732	98	59 / 60	plus
JLOC1	JLOC1_32644.2	6724	4e-23	3467 - 3526	98	59 / 60	plus
JLOC1	JLOC1_32644.1	6625	5e-22	3259 - 3316	98	57 / 58	plus
Harvest21	ABC41656	169	3e-25	35 - 94	100	60 / 60	minus	ABC41656
Harvest35	U35_44140	169	3e-25	35 - 94	100	60 / 60	minus

Contig Sequence (169 bp)

>U35_44140 169 Hv_44K_v2
TTTTTTTTTTTTTTTTTGGCTTTGGTGATGCGGCTCCAGCTCTATTACGCTTAAAAGCCG
GTGTCTTCTGTTTCTCCTCCTGTACAACTGCTAATGGAGAAGCAACAGTAGAAGATGCCT
GAGTGGGAAGAAATAGACCAGGCGTAATAGCCTGTGAAATGGATATACT

Homology of Contig U35_44140 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None