barSeed - Barley Seed Development Database

Probe CUST_41109_PI390587928

Source Contig U35_10771

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41109_PI390587928	Hv_44K_v2	TTAGTGCAGCTTTGCTTTCAACTGTACCGAAACAGCATATGCCAAAAGGAAAGGCGCCAT	955	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354090	1407	7e-23	1276 - 1336	98	60 / 61	plus	ABC15997 ABC23641
MLOC	MLOC_67785.1	1668	7e-23	1465 - 1525	98	60 / 61	plus	ABC15997 ABC23641
JLOC1	JLOC1_44792.1	1551	4e-23	1271 - 1331	98	60 / 61	plus
Harvest21	ABC23641	1026	3e-25	12 - 71	100	60 / 60	minus	ABC23641
Harvest35	U35_10771	1026	3e-25	956 - 1015	100	60 / 60	plus

Contig Sequence (1026 bp)

>U35_10771 1026 Hv_44K_v2
GATTGCTGACCACTTGTCAGCTGAAGAAGTTGAGGACATAAAGGAGATGTTCAAGGTGAT
GGATACTGATAATGACGGTATAGTGTCATATGAAGAATTGAAGAGCGGGATCGCAAAATT
TGGTTCTCACCTTGCAGAATCTGAAGTGCAAATGTTAATAGAAGCTGTGGATACAAATGG
TAGAGGAGCACTAGATTATGGTGAATTTTTGGCTGTCTCACTTCATTTACAAAGGATGGC
AAATGATGAGCACCTTCGGCGAGCCTTCCTGTTTTTCGATAAGGATGGTGATGGTTTTAT
TGAGCCCGAGGAGCTTCAGGAGGCCCTGGCAGAAGATGGGGCGGTTGATATCACAGAAGT
GGTGAAGGACATATTGCAAGAAGTTGACACCGACAAGGATGGCAAAATTAGCTTCGAAGA
GTTTGTAGCAATGATGAAAACAGGCACAGACTGGCGAAAGGCTTCGCGGCATTATTCGAG
AGGACGTTTCAACAGCCTTAGCATAAGGCTTATCAAGGATGGATCTGTAAAGATGGGAAA
CGAGTGAAATCGCACAACACTTGTAGCGGGTGCTCTTACTCCGGGCACGCAAGTCCGGCC
ATTGGCCCCACTAAGCAGAGACCCTCTTTCCTTCTCTAATGATTATTTTGGCGGAAATTT
AGATAGCCCCCCAACCCCCACCCCCCACCCACCTGATTGGCTTACTCGTGTAAGTAGCTT
TCCCGGTATCGCCGAGTGAGGAGGGGCACGCACCGAACCGATGCACCAACAGCTGTGCGC
CTGCTTTGCGGCTTGCCTCCTGTCCCGCCTGATGATATCTCCTTTTGCTGTACCTGATGC
TAAGTGTTGTACAATATTTGGTTGCTTCTTCCCTCTCAGATACAGTCTGTTCGTCTCGAT
GGATTCTTCTGTATTGGTGGCCAAGGACTAGATACGCCTAGTAGGCCACTCACTGTTAGT
GCAGCTTTGCTTTCAACTGTACCGAAACAGCATATGCCAAAAGGAAAGGCGCCATGAGCT
AGTGCA

Homology of Contig U35_10771 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g39090.1	548	5e-113	protein\|CAMK_CAMK_like.29 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi2g22750.1	549	3e-115
Arabidopsis v10	AT3G51850.1	528	7e-88	\| Symbols: CPK13 \| calcium-dependent protein kinase 13 \| chr3:19232667-19235526 FORWARD LENGTH=528