barSeed - Barley Seed Development Database

Probe CUST_41015_PI390587928

Source Contig U35_46736

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_41015_PI390587928	Hv_44K_v2	GCAAGGGTGCTTGTAGGGAGGAGATTGAGTTACAGCGTAAAGAAGGACATCACATCAAAT	627	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353843	2564	2e-24	1848 - 1907	100	60 / 60	plus	ABC15390
MLOC	MLOC_52652.7	3846	2e-24	2431 - 2490	100	60 / 60	plus	ABC12765 ABC15390
MLOC	MLOC_52653.1	4484	2e-24	2431 - 2490	100	60 / 60	plus	ABC12765 ABC15390
MLOC	MLOC_52652.1	3340	2e-24	1564 - 1623	100	60 / 60	plus	ABC12765 ABC15390
MLOC	MLOC_52652.2	3337	2e-24	1561 - 1620	100	60 / 60	plus	ABC12765 ABC15390
JLOC1	JLOC1_33756.1	4384	8e-25	2146 - 2205	100	60 / 60	minus
JLOC1	JLOC1_33755.4	5098	8e-25	1550 - 1609	100	60 / 60	plus
JLOC1	JLOC1_33755.3	5101	8e-25	1553 - 1612	100	60 / 60	plus
JLOC1	JLOC1_33755.2	5106	8e-25	1558 - 1617	100	60 / 60	plus
JLOC1	JLOC1_33755.1	4919	8e-25	1371 - 1430	100	60 / 60	plus
Harvest21	ABC47230	690	3e-25	628 - 687	100	60 / 60	plus
Harvest35	U35_46736	690	3e-25	628 - 687	100	60 / 60	plus

Contig Sequence (690 bp)

>U35_46736 690 Hv_44K_v2
CGCATGAGAAGTTATCGTCCGCAGGAAGGACGGTGGCTGACCCGTACAGTACTTGATTAT
AGTGGGAAAGAATGTTTCGTTGTTAGGATGAGGTATTGTTCAGAATCTATATGTTTTTGA
GTTTCGGAATCTATAGCTTAACACTATTATGTGGCACATACCACACCCCTTAACAAGTTT
TTGGTGAAATTTCTAACAAAATACGTCATGCAGTCCAAAGTTAACCCTTTTGCTTTGATA
TGAAGTAACAATCTGGTGTTGAGTGATTATGTTACTAAGCTTATGCTGGGGGGAACGACA
TTTACTGCTATATCTCAATGCAATTGTGCTAAATTCAATTGCAACATGTGTAGAATAGGC
AGAGGGATTTGGCGGAGAGGACCAGAAACTCCCATGGCAGTGAAATGGGAAGATAGGATC
ATTGAGGTCCGAGAAGGCTCATGGTCCTATATTGCAAGTGCAACATCCGTTGGTTATGCT
CCAGAAAAGGTGGTTGGCACAGCAACGCCAACGAAATATCAACAGGAGAATAAGGTGGTT
TGGCGCTTTTCAACTGGAGATGTAATGACAGTGTGGTTGGGAGATGACCTCAACTTTCAG
CTACAAAATGAGATTTCAGAAGAAGAGGCAAGGGTGCTTGTAGGGAGGAGATTGAGTTAC
AGCGTAAAGAAGGACATCACATCAAATAAC

Homology of Contig U35_46736 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g12637.1	742	4e-58
Arabidopsis v10	None