barSeed - Barley Seed Development Database

Probe CUST_40919_PI390587928

Source Contig U35_6520

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40919_PI390587928	Hv_44K_v2	GTTGGTTGTTTAATGGATACGTTCTGATTTGGTTGCACTTCCTCATATATGTTGCTAAAA	868	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.142	1.375	1.409	0.914	0.324	0.495
Raw	44.583	81.712	75.130	77.065	9.359	15.809

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_13318.10	1388	6e-21	1336 - 1388	100	53 / 53	plus
JLOC1	JLOC1_13318.7	1604	6e-21	1552 - 1604	100	53 / 53	plus
JLOC1	JLOC1_13318.6	1364	6e-21	1312 - 1364	100	53 / 53	plus
JLOC1	JLOC1_13318.5	1410	6e-21	1358 - 1410	100	53 / 53	plus
Harvest21	ABC18549	613	3e-25	14 - 73	100	60 / 60	minus	ABC18549
Harvest35	U35_6520	941	3e-25	869 - 928	100	60 / 60	plus

Contig Sequence (941 bp)

>U35_6520 941 Hv_44K_v2
CCAAAGCTTATTGGGATGATTGGGTGAGACTAAAGGAGGTACGCAGAGATCGGCAGTTTA
TTCGGCCAGAAGTATGCAGAACATACAACTTTGGCGAGCATGGATCAAGCATGGGACAAT
TCTTCGATCAGTACCTGAAACCAATCAAATTAAACGATGCTCATATTGACTGGACCTCCG
AGGACCTGAGCTACCTCACGGAGGACAATTTCTTGATCAAATTTGGGAAAGATGTGGCTA
GTGCCACACCTGTGCATGGATTCGATGAATTGTTGAAGGCCCACAATCTGGATGTGGACG
TAAGGATTCAGTATGACGACCAGGGCGATTTCGAGCGTGTAGCTCGTCAGTTTGGAGTAT
TTGAAGAGTGGAAGGACGGTGTTCCACGGGCAGCTTACAAGGGTGTGGTGGTCTTCCGAT
ATAAGAGCAGTCGAAGACGAATATACCTTGTCGGCCCTGACTCTCTTCGTCAACTCGGGG
TTTAGCTTACGGTGCTGAGGTGGGAAATTTCTCTATTGCCACCCTGACTTAGCATAACAT
GGGCATATATGTAGTGCCAGATCAACAGGGGGTGCAAAAATGAAGCAATGAATTATTTGA
CGATGGAGGATATGCATTTTCGCCCTCATGGCGTATAGTTAGTACAAGGGTCTATGTTAA
AATGTGGTTGGGTTCGTCCGTCCCGCGCGATCTGTAGTTACCATAAGTGAGTGTATTCAA
AATTTTGTGTGTACGCGTTTACATAATGCAACAAATGCATGGCCTAACAAGACAATTCCG
CAAGAAACATATGACAGTAGAGTAACAACCATGGTTGTTCAGTTCTAATAAAGCAACCTA
AGTTTTAGCCACAGTGCTAGTTGTACGTGTTGGTTGTTTAATGGATACGTTCTGATTTGG
TTGCACTTCCTCATATATGTTGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_6520 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g58590.1	449	1e-67	protein\|N-acetylglucosaminyltransferase I, putative, expressed
Brachypodium v1_2	Bradi3g60820.2	443	2e-100
Arabidopsis v10	AT4G38240.1	444	2e-70	\| Symbols: CGL1, CGL, GNTI \| alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative \| chr4:17932006-17935209 REVERSE LENGTH=444