- Probe CUST_40901_PI390587928
- Source Contig U35_6538
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_40901_PI390587928 | Hv_44K_v2 | AGGTTTAATGAAAGAATAGTCATGGCAGATGTACAAAACCGTTTGCTCTGTTTCGAGTAT | 748 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK251994.1 | 3005 | 2e-24 | 701 - 760 | 100 | 60 / 60 | plus | ABC12390 ABC18016 ABC18418 |
| MLOC | AK355574 | 4044 | 2e-24 | 668 - 727 | 100 | 60 / 60 | plus | ABC12390 ABC18016 ABC18418 |
| MLOC | MLOC_14397.6 | 2287 | 2e-24 | 1483 - 1542 | 100 | 60 / 60 | minus | ABC12390 ABC18016 |
| MLOC | MLOC_14397.9 | 3177 | 2e-24 | 2318 - 2377 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_14397.10 | 2970 | 2e-24 | 2233 - 2292 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_14397.7 | 3495 | 2e-24 | 2639 - 2698 | 100 | 60 / 60 | minus | ABC12390 ABC18016 |
| MLOC | MLOC_14397.1 | 3279 | 2e-24 | 2639 - 2698 | 100 | 60 / 60 | minus | ABC12390 ABC18016 |
| MLOC | MLOC_14397.2 | 2022 | 2e-24 | 1260 - 1319 | 100 | 60 / 60 | minus | ABC12390 ABC18016 |
| MLOC | MLOC_14397.3 | 2416 | 2e-24 | 1621 - 1680 | 100 | 60 / 60 | minus | ABC12390 ABC18016 |
| MLOC | MLOC_14397.4 | 2346 | 2e-24 | 1621 - 1680 | 100 | 60 / 60 | minus | ABC12390 ABC18016 |
| MLOC | MLOC_14397.5 | 2230 | 2e-24 | 1483 - 1542 | 100 | 60 / 60 | minus | ABC12390 ABC18016 |
| MLOC | MLOC_14397.8 | 2409 | 2e-24 | 1483 - 1542 | 100 | 60 / 60 | minus | ABC12390 ABC18016 |
| JLOC1 | JLOC1_9838.9 | 3182 | 8e-25 | 731 - 790 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9838.8 | 3252 | 8e-25 | 801 - 860 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9838.7 | 4004 | 8e-25 | 620 - 679 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9838.6 | 3065 | 8e-25 | 614 - 673 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9838.5 | 3031 | 8e-25 | 665 - 724 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9838.4 | 2836 | 8e-25 | 608 - 667 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9838.3 | 4209 | 8e-25 | 602 - 661 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9838.2 | 2931 | 8e-25 | 703 - 762 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9838.1 | 4310 | 8e-25 | 703 - 762 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC15130 | 774 | 3e-25 | 712 - 771 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_6538 | 811 | 3e-25 | 749 - 808 | 100 | 60 / 60 | plus |
Contig Sequence (811 bp)
>U35_6538 811 Hv_44K_v2 AAATGAACAAATGCGAGAGGATAAGGTTTCTTTTTGAGGGTGAAACGATAAGGTTCCTCC AATTCTTATCCCGTGCGTGCGTGGTGCGCCGCTGTTTCCTGCTTAGCTTAGCGACAACGC TCGCCGCCGTGTTGCCGTGCTCTCCTGCCGCCGCCGGGGAAGGAGAGCCACCGCGACACC TTGGGCATCGCTAGCGGAAGGCTGAAGGCCGCCGTTATTTCTGCCGCGGAAGGGGGCGGC GTCAGGAGGACGCCGTGGCCGGGCTGCGCGGCGGCTGTGCTCTCCGAGTGGTGGAGGACG CCGTCGTCGCCAAACGCCGAGGGGTTACTGAAAAGTGATGTCTCTTCTAATTTCCTCCTG AATAAATAATGTGCCTGCTCTCTTTCTCAAGCGGATTGTGGTGCGATAATTGCAAATGGA TATTCAGATGATTCCTTCTACAGTTGAGGACTTGGAGTCCATGGTCATCGATGAAAGTGC AGAACCGAAGGCACTACCATTATCACTTTTGGATGAAATCACATGTGGTTTCTCTGAAAA GCAGGAAATTGGCCGCGGTGGATTTGCGGTAGTTTATGAGGGAAGCCTTCTGAATGTGAC GGTGGCGGTGAAGAAGTTGACCAACCTGCATATGCGTGATGCGCCTGAGGTGGAGTACAA CCGAGAGGTTGAATGCTTGATGAGGGTGAAGCACAAAAATATAGTGCGATTTCTTGGATA TTGTGCTGACACACAAGGGAGTATTGCAAGGTTTAATGAAAGAATAGTCATGGCAGATGT ACAAAACCGTTTGCTCTGTTTCGAGTATGTA
Homology of Contig U35_6538 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |