barSeed - Barley Seed Development Database

Probe CUST_40895_PI390587928

Source Contig U35_6544

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40895_PI390587928	Hv_44K_v2	AAACGTTTCTAATTTGCAGTACATCTTGTCAGACTCGCTGAACTGAATGCTGTGAAAAAA	1136	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_79046.1	1088	9e-22	26 - 80	100	55 / 55	minus	ABC13565
JLOC1	JLOC1_52673.1	885	5e-22	799 - 853	100	55 / 55	plus
Harvest21	ABC13565	1207	3e-25	1137 - 1196	100	60 / 60	plus	ABC13565
Harvest35	U35_6544	1207	3e-25	1137 - 1196	100	60 / 60	plus

Contig Sequence (1207 bp)

>U35_6544 1207 Hv_44K_v2
CGCACACCTCCGCTCACTACTGTTCCACACCTCGTCGGTCGTCGCTGTCCTCCACGCGGT
CGCTTGCCATGCTGCTCCGGCCAGATCACGGCCTCCGCGCGCCGCCGGCGCCCGCGCCCG
CCCCTGCCCGGGCCTCCGCCTCCGTCTCCGCGGCGGCGCTCCCCGCCGTCTCCCGCCTCC
CCCGCGGCGCGCTCCGGCTCCCCCGCGCGGCTTCTACACTCAGGGGCAAAGCGTCGAGCG
CCGTGCGGGCGTCGGCTGGCTCCGCGGAGCCAGCGGGCATGCCGTCGCTGGCGCACCGGG
AGGTGGCGCGGGCCGTGGCGGAAGCGGCGGCGGCGCGGCTGGGCGCCCGGCTGCTGCCAT
CGGCCGTGCCCGCCGACGTCGCCGAGTTCCGCAACGGCGACGGGACCGCCCTCGGCTCCC
TGGACGTGCGCCGCGGCGCGCCCGACTCCTCGATTGATTTCATGCTGCAGTCGTCGCTTC
ACTGCAAAGTCCCAAATGGTGCAATCGACATCACGTCTCTTTTCATCAACCTAAATGCCT
CGACGGATGCACCACATTTCATCATGGAGTTCATCCAAGGCAGCCCAACATCAATGGTCG
TGCTTCTGGACCTGCTCCCAAGGAAAGACCTCGCGCTCCATCCAGAGTACATCGAGAAGT
ACTATGAAGATACCGAGGTGGACAAGCAGCGCAAAATCATCGAAGAATTGCCGCAAGCCC
GCCCGTACCTTTCGCCGTCTCTCTTCGTGCGCAGCGCATTTTCTCCGACGGCGGTGTTCT
TCACCATTGACTGTGGGAAAGGAGGGGAGGGCACCTTGGAAGAGATTGTGCATGGTCATC
TTGCGTCAGTTGTGAAGGGGATTCTTCAGATCTGGCTTGATACTTGCGCCAGTGACGCCT
CAGAAATGGAAGAGGGCGAGCGAGAGATCATGGTCAAGAGGGACCGAACTGTAAGATCAA
AATCGATTGAGGTTGACCTGACCGCGAATTTGCCGAGGATGTTTGGCCCCGACGTGTCCG
GACGCATCATCGCTGAAATTCGTAAGGCCTTTGGGGTACAAGAGGCCTAGGATTCAGAAG
TACAAATGTGACTTTAGATTACAAACCAATGGGAATGTAAATAATTATTTGGTGGAAAAC
GTTTCTAATTTGCAGTACATCTTGTCAGACTCGCTGAACTGAATGCTGTGAAAAAAAAAA
AAAAAAA

Homology of Contig U35_6544 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g25030.1	330	1e-118	protein\|red chlorophyll catabolite reductase, putative, expressed
Brachypodium v1_2	Bradi2g51586.1	262	4e-120
Arabidopsis v10	AT4G37000.1	319	4e-59	\| Symbols: ACD2, ATRCCR \| accelerated cell death 2 (ACD2) \| chr4:17442627-17443762 FORWARD LENGTH=319