barSeed - Barley Seed Development Database

Probe CUST_40854_PI390587928

Source Contig U35_19224

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40854_PI390587928	Hv_44K_v2	TTTTTAAAACTAGTTAGTCAGATTGGCTGCACTCCTGTAGGTTGCAGCACGCCTTTCCTC	737	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_47032.2	567	2e-24	258 - 317	100	60 / 60	plus	ABC30713
MLOC	MLOC_46135.2	564	7e-23	252 - 311	98	59 / 60	plus	ABC30713
JLOC1	JLOC1_30379.2	459	8e-25	199 - 258	100	60 / 60	plus
JLOC1	JLOC1_29896.2	506	4e-23	200 - 259	98	59 / 60	plus
Harvest35	U35_19224	938	3e-25	738 - 797	100	60 / 60	plus

Contig Sequence (938 bp)

>U35_19224 938 Hv_44K_v2
CACAAATCCCCTCGAACCCTAGCCGCCATGTCCTCCCCTCGAACCCTAGCCACTCCTGCC
TTCCCCTCGAGCGTAAGCAATGGCCGATCCAGACACCGGCCGCGCAACGCGAGTAGCGGC
CCGATCGATCCAGCCACCGGCGGCGCGTCCCCTCGAGCGCAAGCAGCAGCCGAGCCAGCC
ACCGGCAGCGCGTCCCCTCGAGCGCGAGCAGCGACCGATCCAGCCATCGGCGACGTAGCG
CGAGCAGCGGGCCATCGATCCAACCACCGATGGCGCGGCGCGAGCAGGGGCCCGATCGAT
CCAGCCACCGGCGACGCGACGCGAGCAGCGGCCCAATCGATCCAGCCATCGGTAGGGAGG
TGCGAGCAACGGCTCGGTCAATCCAGCCACTTGCGGGGCGGGGCGAGCAACAGACGGTCC
AACCACCGAGGGGCGGCGCAAGCAGATCTTCCTGCTGTCCATCGCTCCTGAGAAGAACGA
CGGGTCGACAACCACAGGACCCTCCTGCCTCCTGCAGCTGCAATGTAAGTACATGTGTTC
CCAACGTGAGTAGTACTATTGATTTAATCGTTTAAAGCTTCATCTAATTTGACAGTGTGG
TTTGCTTAGAGAACAAAAAATAGTTGATCTAATCATTCACTGATTCGTGCAAGTAGACTT
TGCTGCTTTTTTGGCCGATTTTCTTATATATAAACTTCTGAAATGTGTACGCATCTGTAG
TTGAGATGTTCTAGTTGTTTTTAAAACTAGTTAGTCAGATTGGCTGCACTCCTGTAGGTT
GCAGCACGCCTTTCCTCGAGCGGCACACGTGACTGGCATCTCGACGCAGATGGCNAAGCA
CGTCCGGTGGAACAGCTCCAGCAGGAGGGCAACAACGGCATTCTTCTTCGTCGTGGGATC
CTAAAAAGTAGTCTGGCATGAAGCTGTGACATGCTCAT

Homology of Contig U35_19224 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None