barSeed - Barley Seed Development Database

Probe CUST_40847_PI390587928

Source Contig U35_21543

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40847_PI390587928	Hv_44K_v2	ACAAAGCACAGCACTTTTTTCTTCCTTGCCATGATAAGATAGAGGAGTGGAGGAGGAGGA	52	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.882	0.639	0.887	1.379	1.057	1.118
Raw	5.180	3.275	7.814	14.161	3.842	5.275

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63621.4	2108	2e-24	1784 - 1843	100	60 / 60	minus	ABC04451
MLOC	MLOC_63621.3	2201	2e-24	1882 - 1941	100	60 / 60	minus	ABC04451
MLOC	MLOC_63621.1	2268	2e-24	1949 - 2008	100	60 / 60	minus	ABC04451 ABC04452
MLOC	MLOC_63621.5	1352	2e-24	1011 - 1070	100	60 / 60	minus	None
MLOC	MLOC_63621.2	2201	2e-24	1860 - 1919	100	60 / 60	minus	ABC04451 ABC04452
JLOC1	JLOC1_41688.1	2189	8e-25	271 - 330	100	60 / 60	plus
Harvest35	U35_21543	579	3e-25	53 - 112	100	60 / 60	plus

Contig Sequence (579 bp)

>U35_21543 579 Hv_44K_v2
AGAGCACAGTCGCACACACAAAGGTGGCTTCCAGGAATCGCTGAAATAGGAGACAAAGCA
CAGCACTTTTTTCTTCCTTGCCATGATAAGATAGAGGAGTGGAGGAGGAGGAGCAGCAGC
AGCGGCGGCATTGCAGCAGCGGGCTGTGAGAGAGCTCACGCGCGGGGGTATCTTGGAATG
GTGGCGATCTCCACCGATTCCTCTCGGATCTAGAGCGGCAGCTCGGCCTCTCTCTCTCTC
TCGCCTTCGTCACCGCCGCCGGTGGGGTGTGAGGGCGGCGGGGGAGCGAAAGATGGCGGC
CAACCGGGGGATGGTCGCGGGGTCGCACAATCGCAATGAGTTCGTCATGATCCGCAACGA
CGGCGACGCGCCCGCCCCGGGTAAGGAGGTAAAAGGCGCGGGTGGTCAGGGCTGCCAGAT
ATGTGGTGACACTGTTGGCGTTTCGGCCACCGGTGATGTCTTTGTTGCCTGCAATGAGTG
CGCCTTCCCGGTCTGCCGCCCTTGCTATGAGTATGAACGCAAGGATGGGGTCAAATGCTG
TCCTCAGTGCAGACTAGANTACAGAGCTGAAAGTAGCCC

Homology of Contig U35_21543 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None