barSeed - Barley Seed Development Database

Probe CUST_40837_PI390587928

Source Contig U35_19232

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40837_PI390587928	Hv_44K_v2	CATATGTTTTCCTGCTTTGTATGTGCTATATGCTTTACATTTGCATCTGCAAGAATGACA	1216	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18151.1	1669	2e-24	763 - 822	100	60 / 60	minus	ABC12066 ABC20930
JLOC1	JLOC1_12552.1	1945	8e-25	903 - 962	100	60 / 60	plus
Harvest21	ABC12066	1265	3e-25	1201 - 1260	100	60 / 60	plus	ABC12066
Harvest35	U35_19232	1281	3e-25	1217 - 1276	100	60 / 60	plus

Contig Sequence (1281 bp)

>U35_19232 1281 Hv_44K_v2
GCAACGCAAGCAGAGGCAAAGAAAAATGGCGATGGCGAGGAGGAGGGTCCTCGCGCTCGC
GTCCCAGCTCCTCCAGAGGCGGGTTCTCCCGGCGCCGCGCTTCCTCTCGTCGGCGGCCTC
CGGCGCGCTCGACCGCCTCAACTCGCCGCCCTTCGCGCGCGCGGCGGCGCACAGGAACCC
CGCCCCCCCTTCCCCATGGGATCGGCTCGGAGGGCAGAAGAGGACCATGTTCATCCAGAC
GCAGTCGACCCCCAACCCGCAGTCGCTCATGTTCCATCCTGGAAAGCCGGTTATGGATGT
TGGGAGCTCTGATTTCCCTAATGCTCGGACCGCCATGACATCTCCTTTGGCGAAGGCGCT
GTTTGCGATCGAAGGAGTTACAAGAGTATTCTTTGGATCTGATTTTGTAACTGTGACAAA
ATCTGACGAGACTTCATGGGATTATCTTAAGCCTGAGGTCTTTGCTGCGATAATGGATTT
TTACTCATCTGGACAGCCACTTTTTCTGGACTCAAACACCGCAGCTGCTATGGACACAGC
AATTCATGAGGATGATTCAGAAATAGTTGCTATGATAAAAGAATTGTTGGAGACCCGCAT
TCGGCCGGCTGTTCAAGATGATGGTGGTGACATTGAATACCGAGGATTTGAGCCAGAAAC
AGGGATAGTGAAGCTAAAAATGCAAGGTGCCTGCAGTGGCTGCCCGAGTTCATCAGTCAC
GTTGAAATCTGGCATAGAGAACATGCTCATGCACTATGTGCCCGAGGTGAAAGGAGTAGA
GCAGGAGTTTGATGGTGATGAGGAAGCTGAACTGGCTGGCCAGATGGAATGAGTTTTTAC
AGTTATAAAACCGCAACCCTGTCACATATGCTTGTTCAGGGGAACCATGCTACACATGAA
AACTCTCTGAGAATTACCACTCCCAAAACCATAGGTTGCCACTATATTTTGTGAGATAAA
GCAGGAATAGCCTGAAGTTTTTGCGATGATTAGATGGTTGTAATTTTGATCAGATGTGTG
TAAGAAGCAGACCATCATACATGGTGGAGAGGCAGCAGTAGCCTAAACCATCTTCGACTG
CAGTAGGGCTGAATAAAGTGATAGTTGGATTGATCTTTCCTTTTGTCCAACGCTGTATAT
GCTGAGCCTGCCTCTAACTAATAGCAAAGGTTATCACTTTGGCATGGCAGGTATAATTTC
ATGGTGGTTATTTCTGCATATGTTTTCCTGCTTTGTATGTGCTATATGCTTTACATTTGC
ATCTGCAAGAATGACAAATAA

Homology of Contig U35_19232 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g06330.1	273	2e-146	protein\|nifU, putative, expressed
Brachypodium v1_2	Bradi2g35070.2	269	3e-160
Arabidopsis v10	AT3G20970.1	283	5e-121	\| Symbols: NFU4, ATNFU2 \| NFU domain protein 4 \| chr3:7348277-7350069 FORWARD LENGTH=283