barSeed - Barley Seed Development Database

Probe ABC12066

Source Contig ABC12066

barSeed

Links

Affymetrix Source Sequence (1265 bp)

>ABC12066 1265
GAAAGAAAAATGGCGATGGCGAGGAGGAGGGTCCTCGCGCTCGCGTCCCAGCTCCTCCAG
AGGCGGGTTCTCCCGGCGCCGCGCTTCCTCTCGTCGGCGGCCTCCGGCGCGCTCGACCGC
CTCAACTCGCCGCCCTTCGCGCGCGCGGCGGCGCACAGGAACCCCGCCCCCCCTTCCCCA
TGGGATCGGCTCGGAGGGCAGAAGAGGACCATGTTCATCCAGACGCAGTCGACCCCCAAC
CCGCAGTCGCTCATGTTCCATCCTGGAAAGCCGGTTATGGATGTTGGGAGCTCTGATTTC
CCTAATGCTCGGACCGCCATGACATCTCCTTTGGCGAAGGCGCTGTTTGCGATCGAAGGA
GTTACAAGAGTATTCTTTGGATCTGATTTTGTAACTGTGACAAAATCTGACGAGACTTCA
TGGGATTATCTTAAGCCTGAGGTCTTTGCTGCGATAATGGATTTTTACTCATCTGGACAG
CCACTTTTTCTGGACTCAAACACCGCAGCTGCTATGGACACAGCAATTCATGAGGATGAT
TCAGAAATAGTTGCTATGATAAAAGAATTGTTGGAGACCCGCATTCGGCCGGCTGTTCAA
GATGATGGTGGTGACATTGAATACCGAGGATTTGAGCCAGAAACAGGGATAGTGAAGCTA
AAAATGCAAGGTGCCTGCAGTGGCTGCCCGAGTTCATCAGTCACGTTGAAATCTGGCATA
GAGAACATGCTCATGCACTATGTGCCCGAGGTGAAAGGAGTAGAGCAGGAGTTTGATGGT
GATGAGGAAGCTGAACTGGCTGGCCAGATGGAATGAGTTTTTACAGTTATAAAACCGCAA
CCCTGTCACATATGCTTGTTCAGGGGAACCATGCTACACATGAAAACTCTCTGAGAATTA
CCACTCCCAAAACCATAGGTTGCCACTATATTTTGTGAGATAAAGCAGGAATAGCCTGAA
GTTTTTGCGATGATTAGATGGTTGTAATTTTGATCAGATGTGTGTAAGAAGCAGACCATC
ATACATGGTGGAGAGGCAGCAGTAGCCTAAACCATCTTCGACTGCAGTAGGGCTGAATAA
AGTGATAGTTGGATTGATCTTTCCTTTTGTCCAACGCTGTATATGCTGAGCCTGCCTCTA
ACTAATAGCAAAGGTTATCACTTTGGCATGGCAGGTATAATTTATGGGTGGTTATTTCTG
CATATGTTTTCCTGCTTTGTATGTGCTATATGCTTTACATTTGCATCTGCAAGAATGACA
AATAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK356386	1589	0.0	424 - 1589	100	1166 / 1166	None	ABC04015 ABC04016 ABC12066
MLOC_18151.1	1669	0.0	758 - 1666	99	908 / 910	CUST_20909_PI390587928 CUST_40837_PI390587928	ABC12066 ABC20930
MLOC_18151.2	683	0.0	1 - 568	100	568 / 568	None	ABC12066
MLOC_26208.2	977	4e-178	639 - 977	100	339 / 339	None	ABC12066
MLOC_26208.1	1776	2e-81	1099 - 1263	100	165 / 165	None	ABC12066