barSeed - Barley Seed Development Database

Probe CUST_4082_PI390587928

Source Contig U35_16796

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4082_PI390587928	Hv_44K_v2	GGAGATGGGAAATTTTGACAGTGTTTGGACATTTACGGTCACAACTTATTTTTGTAATCT	1710	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365432	1682	2e-24	1609 - 1668	100	60 / 60	plus	ABC06493 ABC49748
JLOC1	JLOC1_16369.2	1663	8e-25	1530 - 1589	100	60 / 60	plus
Harvest21	ABC06493	1820	3e-25	1711 - 1770	100	60 / 60	plus	ABC06493
Harvest35	U35_16796	1812	3e-25	1711 - 1770	100	60 / 60	plus

Contig Sequence (1812 bp)

>U35_16796 1812 Hv_44K_v2
CCACCCCACCCCACCTGGACGCCGAATCACCAAAAAGTAGTGCTGGGAGTTCTCGAGAGA
GAGAGCCAGCAAGGAGGCAGCGCGGAGGCCAGGCCACCGTCGCGTGGCGTCCCACCACCA
CCCTCCCTATCGGATCCCGCTGCGCGCAGATCCGCGAGCCCCGGCAATGGCTTCCACGCC
GGCGGACGGAGCAGGCGAGCCGGTCGAGGCCAAGGGCAAGGGGAAGGAGGAGGGGGAGAA
GAAGAAGGCGGGAGGAGGGGTGCTGGGGAGGATGTGGCGCGGGATCTTCGGCGGCCGCGA
GGACTACGAGAAGCGCCTGCAGTACCTGTCCAAGGAGGAGGCCGCCGTGCACGCGCGGAT
GCGCCGCCGGACCCAGTTCTCCCGCCGCACCGTCCGCAACATCATCGTCCTCTCCGTCCT
CGCCGAGGCTGTGGCTGTTGGTTATGCCATCATGATGACAAGAGACGAAGATCTCACTTG
GCAAATGAGGGCAATTCGAGTGCTGCCTATATTTGTTTTGCCTGCCATATCGTCTGTGGT
ATATTCAGCAGTTGTAAACTTCACAAGGATGCGTGAACGGAAAGATGAAAAAACACTGGA
AAAATTGAGAGCTGAAAGGAAGGCCAAGATTGATGAACTGAAAGAACGGACGAATTATTA
CCTTACACAACAGCTTATCCAGAAATATGATCTTGATCCAGCTGCAAAAGCTGCAGCAGC
TTCGGTTTTGGCATCTAAGCTGGGGGCGGATTCTGGCTTAAAAGTACATCTTGGGGAAGA
ACCAAATTTTGATGCGGCAGTGGTTATGAGCAACAATGCTGAGATACTGCCATCAGATGG
TGTGAGAAACAGGAAGCAACCCAATGCAAGAGGCAGCAGGACTGGAAGCACTACAGCTGC
TCATACTTCGGCACAAGGTGCTGAATCTAGCTCAACTCTTAATGCTGGCCTGGAAAACGT
ACAGCCTACAAGGGTTGTAGAACATTGTCAAGGCTCTGGGGCAAGTGATGGTGGATGGAT
TGCAAAAATCGCTGCCTTACTCGTAGGGGAGGACCCATCACAGTCGTACGCTCTGATCTG
TGGCAATTGCCATATGCATAATGGCTTGGCCCGGAAGGAAGATTACCCACACATTACGTA
CTATTGCCCACATTGTCATGCGCTAAACACATCAAAGAACTCGATGGGGCAATACTCAGG
CTCCAGCTCAGGCCCATCGACCCCAGTTGCTCCTGCTGATGGAATATCTGCTACAAGCTC
AGTAGTAGAGAGTGAATTAATTAACATGGCTACAGTGGAGGAGTTGCCAAATGAAGAACA
CACGGAGAAGAAAGTGGAGGCAAGTTGATGATGGTCCGTTACTATCACTGTTGATCTTTG
TGAAATTAGTTCATATCGCCTCGTTTGAACTGGTTTGAGCTGCAGATGTAGCACTGTTGT
AAAATTGGAAATAGGTGACTTATATGATCCACAGCAACCCAGTACAATAATTATTTAGCC
AGTTTGTCCATACATACTTGAGAGGACGAATTTTGTTGGCAATGGGGACTGCTGGAGTGG
CGAATGACAACCTGCCGCCTGACAAGTTGAGGTCGGGAAGCTATGAGGTGGAGGCGAGCA
GGTGAGATCAGTCGGAACATAGTAGTGGTGTAAAACATAGATATGATCGATGCTTCTATT
TTACCCATATTTGTGTCCAGTTGCTCCGTTGGAGATGGGAAATTTTGACAGTGTTTGGAC
ATTTACGGTCACAACTTATTTTTGTAATCTTGATTGATAGCACTAAGTTTTGCTGAAAAA
AAAAAAAAAAAA

Homology of Contig U35_16796 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g41990.1	390	0.0	protein\|expressed protein
Brachypodium v1_2	Bradi3g49400.1	391	0.0
Arabidopsis v10	AT4G31080.2	443	1e-97	Protein of unknown function (DUF2296) \| chr4:15121186-15123072 FORWARD LENGTH=443