barSeed - Barley Seed Development Database

Probe CUST_40817_PI390587928

Source Contig U35_21558

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40817_PI390587928	Hv_44K_v2	CAACGCCGCTGTATCTGTGTTTGTACTATAAACGGGAGTTGGGCATTGCACATTAAAAAA	517	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.109	0.346	0.292	0.914	3.157	6.239
Raw	14.180	4.918	2.752	24.924	31.133	67.080

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC30762	586	3e-25	518 - 577	100	60 / 60	plus	ABC30762
Harvest35	U35_21558	586	3e-25	518 - 577	100	60 / 60	plus

Contig Sequence (586 bp)

>U35_21558 586 Hv_44K_v2
CTCAGATCAGGAGCAACCTTATCAAAAAAGAAGAGCAGCAGAGCCGTGTTTAATCACTTG
TCAAGGACCCATGGCGTTTCTGCAAGGATCATCGCGCGTGACGAGGAGCATCAGCAGCCG
GAAGATGATGGAGGGGAAGAAGAGCCACGGCGGGTCGGGGTTGTGGCGACAGGCTCCGGC
GCCCGTGAGGCAACTGTTCCGAAGGGTGAGGCGCGCCGTGCTGCGGCCGAAGCGCCCTGC
TGTGAGTTTCGGGTACGACCTCAAGAGCTACTCACAAAACTTCGACGACGGCCTCGCCCA
TGTCCACCACCGCTTCATATCGATTTGACGTGCCGCCCGGCCGGACCACGGCTCGAGGCT
GGAGAGTTTGAAGCGTCGTCACCTTCTAATTTGCTCCTCTAGCTCAGCTACCAGTGTACT
GGTATTAGAAAATTACTGTTTGTACATAAATTGCTTAGTGTTGAAAGTCTGAAACTACCA
ATGAACTGACCATGTATGTGCTTCAAACTAATTTGTACAACGCCGCTGTATCTGTGTTTG
TACTATAAACGGGAGTTGGGCATTGCACATTAAAAAAAAAAAAAAA

Homology of Contig U35_21558 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None