barSeed - Barley Seed Development Database

Probe CUST_40803_PI390587928

Source Contig U35_24364

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40803_PI390587928	Hv_44K_v2	GGAGATACGCCGGAGCGCCAAGCCGCGCCGGGACGGGGGCCTGTCGGTGCTCGTCACGGG	397	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368112	1828	2e-24	397 - 456	100	60 / 60	plus	ABC16001 ABC16221
MLOC	MLOC_71845.1	1914	2e-24	423 - 482	100	60 / 60	plus	ABC16001 ABC16221
JLOC1	JLOC1_47768.1	1976	8e-25	411 - 470	100	60 / 60	plus
Harvest21	ABC40570	478	3e-25	379 - 438	100	60 / 60	plus
Harvest35	U35_24364	497	3e-25	398 - 457	100	60 / 60	plus

Contig Sequence (497 bp)

>U35_24364 497 Hv_44K_v2
GGAGCTAGCCCGCCTTCCCTAGCCAACCCACACACTCGCTCGCGACCCTGCACTGCACCT
CACCCACGTCCGTGCGCGGCCAGCCAGCGCGAGGCGCGACAATGCCGTCGGACGCGGCGG
CCAAGGGGGTGAAGCTGGAGCGGTACGCGAGCGGCAGCGCGCTGCTGTTGCGCCGGGTGG
CCAGCGGCAAGTTCGTCTCCGCCTCGTCGCACCTGCTCTTCCGCGCCACCGTGCTCGCCA
CCCTCGCCCTCGTCTTCCTCTTCGCGCTCCACTACCCCTCCCTCCTCTCCCGCTCCTTCA
GCCTCGCCTCCTCCTCCTCCGTTCCACCACGGTCCCACCGGAGCCTGCTGGCGTCCTCGT
CCGCGGCGCCCACGTACGGCGGCGAGCGCTGGCAGAAGGAGATACGCCGGAGCGCCAAGC
CGCGCCGGGACGGGGGCCTGTCGGTGCTCGTCACGGGCGCCGGCGGCTTCGTCGGCGCGC
ACTGCTCGCTCGCCCTC

Homology of Contig U35_24364 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None