barSeed - Barley Seed Development Database

Probe CUST_4065_PI390587928

Source Contig U35_28797

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4065_PI390587928	Hv_44K_v2	TTACAGGCGATCTCGGGATTTAATATTGTCAAGAGTCCATTACGTGCAGTCGAAGAATTG	623	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360496	2831	2e-24	1739 - 1798	100	60 / 60	plus	ABC18976 ABC26649
Harvest21	ABC27863	720	3e-25	624 - 683	100	60 / 60	plus
Harvest35	U35_28797	720	3e-25	624 - 683	100	60 / 60	plus

Contig Sequence (720 bp)

>U35_28797 720 Hv_44K_v2
GGAACTACTTCTATGAGCTAATTAACAAAAACATGGTCCAACCTGTAGAAATTGGCTGTG
ATGGAAAAGCTCGTGCTTGTCAAGTTCACGATATGATGCTTGAGCTCATTATTTCAAAAT
CGGTAGAAGATAATTTCATCTCTTTGGCAGGCCACGGTCAAACTGATTTGGTAAATCCTC
ATGGTCTTATTCGGCGACTATCAGTCCAGCATATTGACCAAGAGCTTGCATCTATATTGG
CGAATGAAGATCTGAGTCATGTGCGATCTCTAACAGTGATCGAATCAACTTGCATCAAAC
ACTTGCCTATGCTTGTTCGTTTTGAAGCTTTGCGTGTACTAGAATTTCAAAATTGTGCGA
GTGTGAACAAGTATGATATGGAAGGTATAGATAAACTATTCCAGCTGAAGTACCTGAGCT
TTAGGGGCACTGACATGTCAAAGCTACCATCAGGAATTGTGAAGCTATATGGTCTGGAGA
CGCTAGATATTAGAAATACACAGATAGAAGAATTGCCCACTGGAATTATTCGGCTTGTTA
AGCTACAACATCTACTCACTGCAAGATATCCCGGTCCTCATGGTGAAATAAAGTTACCAA
ATGGGATTGGAAATATGAGGAACTTACAGGCGATCTCGGGATTTAATATTGTCAAGAGTC
CATTACGTGCAGTCGAAGAATTGNGGAATCTGAATCATTTGAAAGAACTCCATCTACAGT

Homology of Contig U35_28797 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g04110.1	973	2e-67	protein\|MLA6 protein, putative, expressed
Brachypodium v1_2	Bradi1g51687.1	943	6e-96
Arabidopsis v10	None