barSeed - Barley Seed Development Database

Probe CUST_40648_PI390587928

Source Contig U35_3724

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40648_PI390587928	Hv_44K_v2	GCTTATCACATGTTCTCGCTTGTAGTAACTTTGTTATCAGAAATAAAAGTGCATGGAAGA	1503	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55890.1	1799	2e-24	629 - 688	100	60 / 60	minus	ABC06802 ABC20237 ABC38595
MLOC	MLOC_55888.3	2455	2e-24	1112 - 1171	100	60 / 60	minus	ABC06802 ABC20237 ABC38595
MLOC	AK252202.1	1573	6e-24	1515 - 1573	100	59 / 59	plus	ABC20237
JLOC1	JLOC1_36094.1	1257	8e-25	1055 - 1114	100	60 / 60	plus
Harvest21	ABC20237	572	3e-25	497 - 556	100	60 / 60	plus	ABC20237
Harvest35	U35_3724	1579	3e-25	1504 - 1563	100	60 / 60	plus

Contig Sequence (1579 bp)

>U35_3724 1579 Hv_44K_v2
GAGCGAGCTCACGAACAGCACACCATCCGACTCGCTCGCTCTCACTCTCCCCTCCGGCGC
CCGCAGACGCCGCCGGCAGATCCAAGCAATGGATTTGAGGGCGTTCTTCGGGGGCAAGAA
GCAGGAGCCGGAGCAGAACGGGCACGCCAACGGGGGCGTCAAGAAGAGGACCGCCGATTT
GGCCATCTACGAGCAGTACGAGCAGCAGGCCAGGCAGCCGGAGATGCGCGCCGCGGCGAT
TCGCGATGGGAATGCTGATGTTGTTCAGAAGCCTCTCCTACCTCAGTTTGAGTCAGCTGA
AATGCGTAATTTAGCAGAGACATTGTTGCGGGATATTATCCGAGGGAGCCCAGATGTGCA
ATGGGAAAGCATCAAGGGACTAGAGACAGCAAAACGCCTCCTAAAAGAGGCAGTTGTCAT
GCCCATAAAGTACCCAAAATACTTCACTGGTCTACTATCACCGTGGAAAGGCATCTTACT
TTTTGGTCCTCCAGGAACAGGGAAGACCATGTTGGCCAAAGCGGTCGCTACTGAGTGCAA
TACTACATTCTTCAACATTTCGGCTTCATCAATTGTCAGCAAATGGCGTGGAGATTCTGA
GAAGCTAGTCAAAGTTCTTTTTGAGCTTGCAAGACATCATGCACCATCCACAATATTTCT
TGATGAGATTGATGCTATTATTAGTCAGCGTGGTGAAGCTCGTAGCGAGCATGAAGCTAG
TCGACGCTTGAAGACTGAACTACTTATTCAGATGGATGGCTTGACAAAAACCAAAGACTT
AGTATTTGTGCTTGCAGCAACAAATCTACCATGGGAATTGGATGCAGCTATGCTCCGTCG
GCTTGAGAAGCGGATTCTTGTACCACTTCCTGAAGCCGAAGCAAGGCATTCCATGTTTAA
GGAACTTCTGCCCGCAATGACCTCAAATCTAGAGGTCCCATATGATATTTTAGTTGAAAA
GACTGAAGGGTACTCTGGTTCGGATATTCGTCTTGTGTGCAAAGAGGCTGCTATGCAGCC
ATTGAGGCGTCTCATGTCAGTTCTCGAAGCCAGTGATGAGCTGGTGCCAGAGGAAGAGTT
GCCTGAGGTTGGCCCTCTCAAACCTGACGACGTGGAACTTGCTTTGAGCAACACAAGGCC
GTCAGCACATCTCCAAGCACATCGGTATGAAAAATTTAACCAGGACTACGGGAGCCATAT
TCTTTCTTAATAAGATCAACAAAGCACGGTCAGCTTCTCAGGTTTGCCAAGCGGATGCGC
GTTGGTGGTTCATTTGAACATGTACCGGTACAAAGCTATCTTGCCCTACAAGGCCACGCC
AATCGAAATGGCCTTGTTGCTCCATTATATTTATCATTGGACTGTCGCCAAGCAGGATGC
AAAAAACTCTTGATGTGTCTCTTCTAGCGGGACTATACTGCTTTGGAGATCCTGTGAGCC
AGAGTGGTCTTAGGAATAGTTTCTTGCCTGATGTAACGTCTTTTTTTTTGAATTGTCTGG
ATTGCTTATCACATGTTCTCGCTTGTAGTAACTTTGTTATCAGAAATAAAAGTGCATGGA
AGAAAAAAAAAAAAAAAAA

Homology of Contig U35_3724 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g55260.1	387	0.0	protein\|AAA-type ATPase family protein, putative, expressed
Brachypodium v1_2	Bradi2g50290.1	381	0.0
Arabidopsis v10	AT2G34560.2	393	5e-167	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr2:14560266-14562695 FORWARD LENGTH=393