barSeed - Barley Seed Development Database

Probe CUST_40624_PI390587928

Source Contig U35_3748

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40624_PI390587928	Hv_44K_v2	TACTTGTATAGCCTAACTGGGATCCTCGGAGAGAACAACAGCTCCAAATTGTCAGTACCA	28	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_30238.1	502	2e-24	277 - 336	100	60 / 60	minus	ABC00697 ABC00943
JLOC1	JLOC1_20024.1	538	8e-25	167 - 226	100	60 / 60	plus
Harvest21	ABC00608	403	3e-25	29 - 88	100	60 / 60	plus
Harvest35	U35_3748	403	3e-25	29 - 88	100	60 / 60	plus

Contig Sequence (403 bp)

>U35_3748 403 Hv_44K_v2
ACGTTTTTATATTATGGAAGTTTTTTATTACTTGTATAGCCTAACTGGGATCCTCGGAGA
GAACAACAGCTCCAAATTGTCAGTACCACTCTCATGCAAGTGCGGTACCGCGTGCGGCTG
CTCCTGCTGCAGCTGCAACTGAGCCGGCGGCCAGGAGGCCGGCCGGCAGAGGCGAGCACG
AGGATGAGAGGAGGACAAGCAACCAACCAAGCAAGCACCATCACCAGTTCGCCACCAAAC
CAATCTCAATTTCACTGCCCCCAGTCGCACGTTCTGTATGCAGCAACACTACGCAGGTGC
TGAAGGAGAGCATCAAGATCTACTGCGCGGTGAACGATGGCATCATCAACCTCGTGGATG
TGCCACCGGCGTCGTTTCTTGTGACGATGGAACAGTACATCAG

Homology of Contig U35_3748 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None