barSeed - Barley Seed Development Database

Probe CUST_40621_PI390587928

Source Contig U35_3751

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40621_PI390587928	Hv_44K_v2	AGAGAAGTCACTTAAACATATGTGGCTTATGTCTGTCTGGTCTCCATTGGTTTCAGACAA	1099	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68747.3	1198	7e-23	1031 - 1090	98	59 / 60	plus	ABC09147 ABC09148
JLOC1	JLOC1_45512.1	1264	4e-23	1101 - 1160	98	59 / 60	plus
Harvest21	ABC09148	797	3e-25	705 - 764	100	60 / 60	plus	ABC09148
Harvest35	U35_3751	1192	3e-25	1100 - 1159	100	60 / 60	plus

Contig Sequence (1192 bp)

>U35_3751 1192 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGATTTGCCCCCGAGAGCCCGAGAAGACAGAAGAAAGAGTA
GGGCTAGGGCCTAGGGGTTTCTGGTCACGCCGGCGGCGGCGGCGCCATCTCCGGCCACCC
TGGCGACCGGAGATCGCCTCTCCGCCACCCGGGTCTCACCTTACTCCTCCTCTCCTCGTC
CCCACTCCTGGAGATCGCTCCCCGGCGTCATCCCCGACCCTCGACCGAGCGCCCCCGGTT
GAGCAACTTCTCGTCTCGGCTTCTTCTCCAATCCCATTCATTGCCTTCCCAGCGATTCCC
ACGGGCCGCAGCTAGCTCCACCTTCGCACTACCGGGAGGGGGAGATCGTACCGCAGATGC
CTACATCGGAGCCATCGGCGGCTGCGGCTGCCGGGGCGGGCGGCGATGCAGCCAGCCAGA
GGGCTGCGGTGGAGCCGGTCCATCTGCCAACGCCGGAGGAGTTCAAGGGGCAGGAGATGA
TGAACAACTGCGCCGTCCGGAGCGTCCTCAGTGGTGTCATGGGGGGTGGTCTTGGTGTAC
TTATGGGACTATTTTTTGGAGCTTTGGAAAATCCAATAATGGCAGAGGAGATGACAGCAA
GACAACAAATAGTCTACCAGGCAAAACAAATGGGTAGGAAGAGTATGAGCCATGCTAAGA
CCTTTGCAGTAATGGGCTTGATTTTCTCTGCAGCTGAATGTGTCGTGGAGAAGGCTCGGG
CAAAGCATGACATTACCAATTCGGCAGTAGCTGGCTGTGTCACAGGAGGGGCTTTAGCTG
CAAAAGGTGGCCCTCAAGCTACATGTATCGGGTGCGTGGGTTTTGGTGCCTTCTCTGTGG
CGATTGAGAAGTTCATGGATAGACACACATGAATCGGTGATGAAAACGTTGCATCCAACT
ACTGTACAAATCAAGTGACGCTCCTATCTTTGTAGCAAGCAGCATTAGCAGGGATTCAGC
ATTGGCCGAAGAAGTTGTGGCTATTTTGCAATACTCAGTGTAGCCAAACCAAAATTTGAC
TACGTCTTGCGGCAATCCATAGCTATTTTATTTTCTCCAGTCTGTAGCCAGTCTGATGCC
AGTCTTATATCTTTGCTTGAGAGAAGTCACTTAAACATATGTGGCTTATGTCTGTCTGGT
CTCCATTGGTTTCAGACAAGTCTATTTAACTTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_3751 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g18500.1	168	9e-69	protein\|mitochondrial import inner membrane translocase subunit Tim17, putative, expressed
Brachypodium v1_2	Bradi1g65220.1	171	8e-66
Arabidopsis v10	AT3G10110.1	173	9e-55	\| Symbols: MEE67 \| Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein \| chr3:3116225-3117378 FORWARD LENGTH=173