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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_4058_PI390587928Hv_44K_v2TCCCCTTCTATAATGTATACCGTTGTGCGCTACACTTGTACAGTATTGTACATCAAAAAA11GeneList: green
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.1001.2861.3141.1420.4900.596
Raw 746.3031385.8561223.6261716.236249.120333.070



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_36476.629599e-222704 - 275810055 / 55plus None
MLOCMLOC_36476.278799e-227610 - 766410055 / 55plus ABC08802
MLOCMLOC_36476.378749e-227605 - 765910055 / 55plus ABC08802
MLOCMLOC_36476.547269e-224576 - 463010055 / 55plus ABC08802
MLOCMLOC_36476.178799e-227605 - 765910055 / 55plus ABC08802
JLOC1JLOC1_23489.242005e-223945 - 399910055 / 55plus
JLOC1JLOC1_23489.144215e-224166 - 422010055 / 55plus
Harvest35U35_493074793e-2512 - 7110060 / 60minus



Contig Sequence (479 bp)

>U35_49307 479 Hv_44K_v2
TTTTTTTTTTTTTTTTTGATGTACAATACTGTACAAGTGTAGCGCACAACGGTATACATT
ATAGAAGGGGAGAACGACGGCCCCCCTGCTTAGTATCCACTGAATTCAACCAGCGAGGAA
TACGACGTGTTCTCGTCAGTCGAAGCAGCATTTCGAACATCGGGAGCTCTTGCTCCCTGT
CGATTCTCAGACTTGTCCGAGGCGGCGACGCCAAAACCAGCCATCACATTCAGTTCCGAC
CTCTTGTGCCTCGCTTCCTCGACGTCTCCTTCCCAGCATGTCTCGGCGAGCACTTCCTGG
GCTTTATCCATATCTTCCGCCGAGATCAAACTGTCATTTTGCAGCAGCACGAGGTACACC
TGATCAGCCGCAGCCTTCCGGATCTTGGGGTATCGATGGCCTAGGAACACTAGAAGTTGG
GAGAATGCCTTGGTGCCAGTTCCATCCAGTTGTGAAGAATATATCCAAGGATTGAGAGG



Homology of Contig U35_49307 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os10g36490.111408e-56protein|HEAT repeat family protein, putative, expressed
Brachypodium v1_2Bradi3g30790.211563e-58
Arabidopsis v10None