barSeed - Barley Seed Development Database

Probe CUST_40521_PI390587928

Source Contig U35_29329

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40521_PI390587928	Hv_44K_v2	TCGACAACGTTGTTCTAGACAGGATGAAGCAATTCGTGGCCATGAACCAGTTCAAGAAAG	183	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72770.1	1826	2e-24	1145 - 1204	100	60 / 60	plus	ABC10231
JLOC1	JLOC1_48420.1	1873	8e-25	1124 - 1183	100	60 / 60	plus
Harvest21	ABC28581	319	3e-25	184 - 243	100	60 / 60	plus
Harvest35	U35_29329	319	3e-25	184 - 243	100	60 / 60	plus

Contig Sequence (319 bp)

>U35_29329 319 Hv_44K_v2
TCTTCACCGCCATTCTGCGCGGTGAGGTCGACTTCGCCAGCGACCCGTGGCCAAACATCT
CCGCCGGAGCCAAGGATCTTGTCAGAAAGATGCTCCATATCAACCCCAAGGAGAGGCTTA
CAGCCATCCAAGTCCTCAATCACCCATGGATCAAGGAAGACGGAGAAGCCCCCGACACGC
CGCTCGACAACGTTGTTCTAGACAGGATGAAGCAATTCGTGGCCATGAACCAGTTCAAGA
AAGCCGCGCTGAGAGTCATTGCTGGGTGCCTGTCAGAGGAGGAGATCAAGGGTCTCAAAG
AGATGTTCAAGAGCATCGA

Homology of Contig U35_29329 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g04170.1	542	1e-57	protein\|CAMK_CAMK_like.42 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi4g43400.1	550	1e-59
Arabidopsis v10	AT5G12180.1	528	2e-51	\| Symbols: CPK17 \| calcium-dependent protein kinase 17 \| chr5:3937136-3939323 FORWARD LENGTH=528