barSeed - Barley Seed Development Database

Probe CUST_40519_PI390587928

Source Contig U35_31642

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40519_PI390587928	Hv_44K_v2	TTCCATCCAGCATTCTCAGACCGAGTGAGCCTACTTTTGGGAGCACGCAACGCATGGCTC	14	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358343	1089	2e-24	16 - 75	100	60 / 60	plus	ABC02669 ABC02670 ABC02671 ABC02672 ABC02673 ABC29512 ABC40934
MLOC	MLOC_39753.1	380	2e-24	63 - 122	100	60 / 60	minus	ABC02670
JLOC1	JLOC1_25940.1	380	8e-25	63 - 122	100	60 / 60	minus
Harvest21	ABC02670	1178	3e-25	3 - 62	100	60 / 60	plus	ABC02670
Harvest35	U35_31642	444	3e-25	15 - 74	100	60 / 60	plus
Harvest35	U35_411	1286	3e-25	36 - 95	100	60 / 60	plus

Contig Sequence (444 bp)

>U35_31642 444 Hv_44K_v2
ACACAAACACAAGTTTCCATCCAGCATTCTCAGACCGAGTGAGCCTACTTTTGGGAGCAC
GCAACGCATGGCTCGCGGCGGCGAGCTTCGACAAGGAGTTCGACGTTACCTGGGGTGACG
GGCGCGGCAAGATCCTCAACAACGGCCAGCTCCTGACGCTGGGACTGGACAAGGTCTCCG
GCTCCGGGCTCCAGTCCAAGCACGAGTACCTCTTCGGCAAGATCGACATGCAGCTCAAGC
TCGTCCCCGGCAACTCTGCCGGCACCGTAACCGCCTACTACCTGTCGTCGCAGGGGCCGA
CGCACGACGAGATCGACTTCGAGTTCCTGGGCAACGTCACCGGCGAGCCCTACACGCTGC
ACACCAACGTGTTCACGCAGGGGCAGGGCCAACGGGAGCAACAGTTCCGCCTCTGGTTCG
ATCCCACCAACGACTTCCACACCT

Homology of Contig U35_31642 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g48200.1	291	3e-78	protein\|glycosyl hydrolases family 16, putative, expressed
Brachypodium v1_2	Bradi1g33840.1	294	2e-79
Arabidopsis v10	AT5G57550.1	284	3e-70	\| Symbols: XTR3, XTH25 \| xyloglucan endotransglucosylase/hydrolase 25 \| chr5:23305055-23306384 REVERSE LENGTH=284