barSeed - Barley Seed Development Database

Probe CUST_404_PI415269222

Source Contig TA51159_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_404_PI415269222	Hv_44K_v2	TTTTATATGCCAATGTACTTACTGATGTAGCTCTGTTCAGAATAGAGGATGATCAGCAGC	805	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.367	1.421	2.209	1.937	0.783	0.643
Raw	32.043	203.574	262.801	368.235	53.425	46.896

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367304	2692	2e-24	2537 - 2596	100	60 / 60	plus	ABC10369 ABC15434
MLOC	MLOC_53950.4	1824	2e-24	1692 - 1751	100	60 / 60	plus	ABC15434
MLOC	MLOC_53950.3	1833	2e-24	1603 - 1662	100	60 / 60	plus	ABC15434
MLOC	MLOC_53950.1	1950	2e-24	1720 - 1779	100	60 / 60	plus	ABC15434
MLOC	MLOC_53950.2	1948	2e-24	1718 - 1777	100	60 / 60	plus	ABC15434
JLOC1	JLOC1_34700.2	2085	8e-25	1727 - 1786	100	60 / 60	plus
JLOC1	JLOC1_34700.1	2090	8e-25	1732 - 1791	100	60 / 60	plus
Harvest21	ABC15434	1105	1e-23	925 - 984	98	59 / 60	plus	ABC15434
Harvest35	U35_6978	1105	1e-23	925 - 984	98	59 / 60	plus

Contig Sequence (868 bp)

>TA51159_4513 868 Hv_44K_v2
CGGCACGAGGCCTCTCTGGGGTGTGGTCTACGTTCCAACTGTTATCACCCTCTGCAAGGC
TCTTGGATCACCAAGTTCATTCCATCTGGCGATTCTCTGGGTCCTCTTTGAGAACGTGAT
GTCGTTGCACCGGATAAAAGCGGCGGTAACCGGTCTTCTTGATGCTGGACGAGTTAATGA
ATGGGTTGTCACTGAGAAATTGGGAGATGCCAACAAGACGAAGCCAGCCATGGAAGTATT
AGATGCTGTCAAAGTGATAGATGTTGAGCTAACAACGCCCTTAGTGCCAAAGCTCAAGAA
GAGGAGAATAAGATTATGGGACAAGTACAACTGCTCAGAGATTTTTGTTGGAACCTGCAT
AATAATATGCGGTTTCTACGACGTGCTCTACGCAAACAAGGGATACTACATCTACCTCTT
CATTCAAGGCCTGGCATTCCTCGTCGTCGGTTTTGAGTATATTGGCACACGCCCTCCCAC
TCCCAGTGCCGAATAAGGTGCCATTCATGGAGCTGATATACATGGTTACGGCAAACCGCG
TGCGACTAAAGCCCCTCTCCTGCACATATCGATCTCACAACATAGCGATATACAGAACCA
TTTTCCTCGGCCCCGGTCAGATCTGATCCAACCAATCTTTGCTGCTGAGAAGGCTATCGA
AATAGCATGGTAGCTCATCTGATAATAACGTGCAGTATTTACTGAAGCATCACGACAGAA
AGATGCTTTCAACACCTGGAAGAATAACAGAAGTTGTAAATGAGATAACATGCTCTGCCA
ATTACTTACTGTAGATTCTCCAAATTTTTATATGCCAATGTACTTACTGATGTAGCTCTG
TTCAGAATAGAGGATGATCAGCAGCGCT

Homology of Contig TA51159_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g33740.1	595	4e-87	protein\|CSLA11 - cellulose synthase-like family A, expressed
Brachypodium v1_2	Bradi3g36697.1	558	2e-94
Arabidopsis v10	None