barSeed - Barley Seed Development Database

Probe ABC10369

Source Contig ABC10369

barSeed

Links

Affymetrix Source Sequence (2082 bp)

>ABC10369 2082
GCTCGCTCCACACTGCCCGTCCCGCAGCCCCTGGCGCGCTAGCTTGCTCTAGCTAGGCCA
GCAAGGTCGCGCGCGCGCCATTAATCTTCCTCGCCCGCGGCATTGCCTCGTCCCGGCCGG
CGGCGAGGGGATCCAGCTTTGGCCAAGGGCTTAACAGGCGAGCGATGGACGCGGCGGTGG
GGCTGCCGGACGCGTGGTCGCAGGTGCGGGCGCCGGTGATCGTGCCGCTGCTGAAGCTGG
CCGTGGCGGTGTGCCTGCTCATGTCGGTGCTGCTCTTCCTCGAGCGGCTCTACATGGCGG
TGGTCATCGTCGGGGTGAAGCTCCTCGGCCGCCGCCCGGAGCGGCGGTACAAATGCGACC
CCATCTCCGAGGACGACGACCCGGAGCTCGGCAGCGCCGCCTTCCCCGTCGTGCTCGTCC
AGATCCCCATGTTCAACGAGCGGGAGGTGTATCAGCTGTCGATCGGCGCGGTGTGCGGGC
TGTCGTGGCCGTCGGATCGGTTGGTGGTGCAAGTGCTGGACGACTCCACGGACCCCCTCA
TCAAGGAAATGGTTCGGATGGAGTGCGAGCGGTGGGCGCACAAGGGGATCAACATCACGT
ACCAGATCCGGGAGGACCGCAAGGGGTACAAGGCCGGCGCGCTCAAGGCGGGGATGAAGC
ACGGGTACGTGCGCGAGTGCGAGTACATGGTCATCTTCGACGCCGACTTCCAGCCGGACC
CCGACTTCCTCCACCGCACCATCCCCTACCTCCACCACAACCCGGAGATCGCCCTCGTCC
AGGCGCGACGGAGGTTTGTGAACGCCGATGAATGCTTGATGACGAGGATGCAGGAGATGT
CCTTGGATTACCACTTCAAAGTGGAGCAGGAAGTGAGCTCCTCCGTCTGCGCCTTCTTCG
GCTTCAACGGAACCGCCGGTGTGTGGCGCATTTCTGCAGTGAATGAAGCAGGGGGCTGGA
AGGACCGGACCACCGTGGAGGACATGGATCTGGCTATCCGGGCCAGCCTCAAGGGATGGA
AGTTTGTCTACCTCGGCGATGTTCAGGTTAAGAGTGAACTCCCCAGCACTTTCAAAGCCT
TCCGGTTTCAGCAGCACAGATGGTCTTGTGGTCCGGCAAACCTGTTCAGGAAGATGCTGT
TGGAGATTGTGACAAACAAGAAAGTGACAATCTGGAAGAAATTCCATGTCATCTACAACT
TCTTCTTGGTGCGCAAGATCGTCGCCCACATTGTGACATTCACCTTCTACTGCATAATCA
TCCCGACAACCATCTTTGTCCCTGAGGTTCATATACCAAAGTGGGGTTGCGTCTACATTC
CAACCATCATCACCCTCCTCAATTCTGTTGGAACTCCCAGGTCTTTCCACTTGCTTTTCT
TCTGGATCCTCTTCGAAAACGTCATGTCGCTGCATAGAACCAAGGCCACATTGATTGGCT
TGTTAGAGGCAGGCAGGGCGAATGAATGGGTCGTCACGGAGAAGCTCGGCAGCGCCATGA
AGATGAAATCCGCTAACAAAGCATCAGCCAGGAAGTCATTCATGAGGATGTGGGAGAGGT
TAAACGTTCCGGAGCTCGGCGTGGGAGCCTTCCTCTTCTCATGTGGATGGTACGATGTCG
CGTTCGGGAAGGACAATTTCTTCATATACCTTTTCTTCCAGTCGATGGCTTTCTTCGTCG
TCGGGGTTGGCTACGTTGGCACAATCGTCCCACCGTCATAACTGAAAGAACGTCGGGATC
ATGCGCTCTGCAGTTCACAGTTCCCTGAGAAATCAGCAAAAGATTAGTTGGCCGTGCATA
GCCAGTTTAAAAGTAAAGATCACGCAGTCTTCTCGGGGTTTCTCTCTGTTTTCCTTCCTC
TTTGGAGACTGATAGTATTGCAGCATTCCCTTGAATGTGCTATTGTAAAAGAAAGCCAAG
TGCGGTGTAAGGTCACTGCATGTGTATTTGTGGTGTTCTCTTTTTGCTTGTAGCAAGTAC
GTGCCGTGATTATGGGGAGCAGGATGTCTCTGCTTCCAAGTCGAATGTAATACTAATAGT
ATAAGAAAGAAAAAAAGGTTCAGGCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_12233.1	2402	0.0	14 - 2079	99	2063 / 2066	CUST_10688_PI390587928 CUST_79_PI415269222	ABC10369
MLOC_12233.2	1577	0.0	1 - 1439	99	1438 / 1439	None	ABC10369
MLOC_53950.5	1465	4e-150	2 - 981	77	758 / 989	None	ABC10369 ABC15434
AK367304	2692	3e-126	730 - 1365	80	507 / 637	CUST_404_PI415269222	ABC10369 ABC15434
MLOC_55988.1	2146	3e-122	762 - 1774	75	759 / 1017	None	ABC10369 ABC15434
MLOC_55988.2	2148	2e-119	762 - 1776	74	759 / 1019	None	ABC10369 ABC15434
MLOC_81602.3	1786	2e-103	1212 - 1449	95	227 / 238	None	ABC10369
MLOC_81602.1	1495	1e-80	1087 - 1289	94	190 / 203	None	ABC10369
MLOC_55988.3	668	5e-65	1 - 380	79	299 / 380	None	ABC10369
MLOC_81602.4	1849	1e-51	1096 - 1222	96	122 / 127	None	ABC10369
MLOC_81602.2	2131	1e-51	1242 - 1368	96	122 / 127	None	ABC10369