barSeed - Barley Seed Development Database

Probe CUST_40481_PI390587928

Source Contig U35_11245

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40481_PI390587928	Hv_44K_v2	GTGCAGCCACCTAAATTTGAAGCAGAAGTTCTCTGTTACCCAAAACCAAAGATAGTTTGT	500	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.406	1.256	1.009	0.789	0.372	0.339
Raw	237.306	300.942	233.550	276.996	47.153	47.249

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68656.3	2053	2e-24	1471 - 1530	100	60 / 60	plus	ABC24303
MLOC	MLOC_68656.7	2470	2e-24	483 - 542	100	60 / 60	minus	ABC13289 ABC24303
MLOC	MLOC_68656.6	1783	2e-24	483 - 542	100	60 / 60	minus	ABC24303
MLOC	MLOC_68656.8	2487	2e-24	478 - 537	100	60 / 60	minus	ABC13289 ABC24303
MLOC	MLOC_68656.9	2365	2e-24	478 - 537	100	60 / 60	minus	ABC13289 ABC24303
MLOC	MLOC_68656.1	1793	2e-24	556 - 615	100	60 / 60	minus	ABC24303
MLOC	MLOC_68656.4	2366	2e-24	507 - 566	100	60 / 60	minus	ABC13289 ABC24303
MLOC	MLOC_68656.5	2747	2e-24	507 - 566	100	60 / 60	minus	ABC13289 ABC24303
MLOC	MLOC_68656.2	2752	2e-24	556 - 615	100	60 / 60	minus	ABC13289 ABC24303
JLOC1	JLOC1_45438.6	2536	8e-25	1804 - 1863	100	60 / 60	plus
JLOC1	JLOC1_45438.5	2525	8e-25	1793 - 1852	100	60 / 60	plus
JLOC1	JLOC1_45438.4	2265	8e-25	1533 - 1592	100	60 / 60	plus
JLOC1	JLOC1_45438.3	2666	8e-25	1934 - 1993	100	60 / 60	plus
JLOC1	JLOC1_45438.2	2575	8e-25	1843 - 1902	100	60 / 60	plus
JLOC1	JLOC1_45438.1	2653	8e-25	1921 - 1980	100	60 / 60	plus
Harvest21	ABC26519	563	3e-25	501 - 560	100	60 / 60	plus
Harvest35	U35_11245	563	3e-25	501 - 560	100	60 / 60	plus

Contig Sequence (563 bp)

>U35_11245 563 Hv_44K_v2
ATCGAGATAAGGTAGAAACAAAGGTAAAAACAGACGACTACGGGAATCCCATAAAAAGAA
TCCGGCTGGCAATTACAGTGTCAAATTTGGATATCATAGGACCTGAGTTTTGGGAAAAAC
ATCAATACATTCTTCGAGAAGAAAAATGTAGATACGAGTATGTGAAGAAGTTTGACGACA
TCCGTAGGCTTCCATGTTGTAATTGGATCGTTGTTCGTATCAGCACCTGCCAATTCGATC
AATTCTCGCTGATCCATTCATTTGACAAGCCAAATGATGAGACCGCTTTAAGTTTGATGA
ACGCTTCTGCTTCTTTCATGATGGAGCAATTCCCTGATATTATCTTTTGTTATGGTTTTA
GCAACGAGTACAGCTTTGTGTTCCAGGAGAACACTGAATTGTACCAGAGAAATGAGAGAT
TACTCCTTTCTTCATGTTCATCATGTTTCACTTCCTTTTACATGATGAAGTGGAAAGAAT
ATTTCCCCGGTAAAGAATTAGTGCAGCCACCTAAATTTGAAGCAGAAGTTCTCTGTTACC
CAAAACCAAAGATAGTTTGTGAT

Homology of Contig U35_11245 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g45890.2	410	2e-96	protein\|tRNAHis guanylyltransferase family protein, expressed
Brachypodium v1_2	Bradi2g18677.1	515	4e-109
Arabidopsis v10	None