barSeed - Barley Seed Development Database

Probe CUST_40442_PI390587928

Source Contig U35_23239

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40442_PI390587928	Hv_44K_v2	GGCTTGAGCTGTGTTTGTTTTGACTTCTTGTTGTGAGAATAAAGGGGTGCGGTTTTCAAA	650	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354003	1648	3e-22	1591 - 1646	100	56 / 56	plus	ABC00917 ABC00994 ABC16294
JLOC1	JLOC1_10990.1	1002	1e-22	750 - 809	98	59 / 60	plus
Harvest35	U35_23239	724	3e-25	651 - 710	100	60 / 60	plus

Contig Sequence (724 bp)

>U35_23239 724 Hv_44K_v2
GCTTCCCACTGATATTGTAGTAGCAAATAATTTTGCTGCAGATGCTGAGAGCAAGATTGT
TCCTGCCTCTGCTATTCCTGATGGTTGGATGGGCCTTGACATTGGCCCGGATTCTATCAG
GAAATTCAGTGAAACTTTGGACACTACCAAGACTGTCATCTGGAACGGGCCGATGGGAGT
TTTCGAATTTGAAAAGTTTGCTGCTGGCACCGATGCGATCGCGAAAAAGTTGGCTGATAT
CACAGCACAAGGCGTGACAACCATCATCGGAGGCGGCGACTCTGTTGCTGCCGTCGAGAA
GGCTGGGTTGGCGAGTAAGATGAGCCACATTTCGACCGGTGGTGGCGCAAGCCTAGAGCT
GCTGGAAGGCAAGACTCTCCCAGGCGTCCTTGCTCTGAACGACGCATAGGCTAGGCTGGT
GGCAAGACGTGGTTACCTAGCTTTACTCCACTCTATTGTTCGGACCCTTGGTGTACAGAT
GCGAGTGTATCCTGAAATAGAAGTAGAGGTTTCTCTGAAGGTTTTGTCAGACGATCAGTA
GTGAATAAGCTTGACTTCCGACGCAATGGGAGCAAACATCTCTCAAGGTTTTGTCAGACT
ATTTGGCACAAGCAAACCTTTATTGGTCGATGTAACACTGTATACTGCATGGCTTGAGCT
GTGTTTGTTTTGACTTCTTGTTGTGAGAATAAAGGGGTGCGGTTTTCAAAAAAAAAAAAA
AAAA

Homology of Contig U35_23239 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g45710.1	402	3e-81	protein\|phosphoglycerate kinase protein, putative, expressed
Brachypodium v1_2	Bradi3g05220.1	402	5e-75
Arabidopsis v10	AT1G79550.1	401	2e-72	\| Symbols: PGK \| phosphoglycerate kinase \| chr1:29924347-29926295 REVERSE LENGTH=401