barSeed - Barley Seed Development Database

Probe CUST_40423_PI390587928

Source Contig U35_23242

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40423_PI390587928	Hv_44K_v2	GAGAGGAGAGGAGATTCCTTGGAAGATTGTTACCATAGTAAATGGAGAGGTGTTATATGT	1688	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55539.1	1004	2e-24	504 - 563	100	60 / 60	minus	ABC21120
JLOC1	JLOC1_35841.1	756	8e-25	256 - 315	100	60 / 60	minus
Harvest21	ABC37395	580	3e-25	509 - 568	100	60 / 60	plus
Harvest35	U35_23242	1760	3e-25	1689 - 1748	100	60 / 60	plus

Contig Sequence (1760 bp)

>U35_23242 1760 Hv_44K_v2
AAGCACCGCACCGCCGCTCCCAGCTGCCCCTGGCCGGCGGCCGTGCCCCGCTCGATGTTA
CGCCACTCCTAGTCTAACCCGAGCTCCCTCCCCCAGCCAGCGTTCGGAGCCGATGCCGCT
CGCCGGCATTGCCCTCGCGCCTCTCCTCGTATCCCCTCTCGCGCCTCCCTCTCCCTGTGC
CCGTGGCGGCGTTGCAGTCTCCGCAGAGCCCCGGGGAAGGCGCCGCGCGCTACGGCGGGT
GCGGTGCTCGGCCGCAGCGGCGTCCGGCGGAGGCGGTGACGCCGGCGAGCTGTCACGCGC
CACGCTGCTCTGGAGGGCCGCCAAGCTGCCCATCTACTCCGTGGCGCTCGTGCCGCTCAC
CGTAGGGGCTGCTGCTGCTTACAACCACGCGGGGCTGTTCTTCGCCGGGCGCTACTTCGG
CCTCTTGGCAGCTGCTGTCCTCGTGATCACCTGGCTCATCTGAGCAATGACGTTTACGAT
TCAGATACCGGTGCTGATAAGAACAACAAAGAATCTGTCGTCAACATTGTTGGCAGCGAG
GGCGGAGGAGGAGGATCTTTGGAGGACATGGAACTCGCGCTCGACGGCGTGGGCGGACTG
GAGGATGGCGCCGGCGGGCTTCTTCTGCAGCACGTACCGCCGGGGCTCCCCGCCGGGCGC
GGAGGCCTCGAGGCAGTAGGTGGGGTTGGACTGGTCGTGGCCGAACTTCGTGAGGGCGAG
CGACGGGGCCCACGCGGGGAAGCCCGGGACGTGCGCGGCTACGTACCGCAGCAGCGCCGC
CTTGTCCAGCGCCTACGCCTCGTGCACCGGCCGCAGCAGGTCCGAGGGGACGACGACTGT
GGAACAGTCCGGGATTGGATTGCTGATTGCGTGGCTGTTGGAAAGTGGCTAAACCGGAGG
CATGCTCTCCAACTGAGGGCACAACAGGGGATTCCGGTCTCTGAATACGGGGTTTTGGTT
GACATGATTGGTGTGCCTGACTGGGCTTTCGAAGCGGTCGGCTTGGAACTGAGAGGAATG
GGCCAAGACACTGCATATCATCCTGGCCTTTACCTGACAACAGCCCAGAGGGAAGCAGTG
GAGGCTCTGATCCAGGAGCTCCCCAAGTTCATGCTGAAAGCGGTGCCGACGGACTGCAGC
GAGTGCCCGATCTGCCTGGAAGAGTTCAAGGTGGGGAACGAGGTGCGTGGCCTCCCGTGC
GCGCACAACTTCCACGTGGAGTGCATCGACCAGTGGCTGCGGCTGAACGTCAAGTGCCCG
CGGTGCCGCTGCTCAGTGTTCCCCAACCTGGACCTGAGCGCGCTCAACGGCATCCGCTCC
AGCAGCGAGATGCTGCAGCAGGACCGCCCCTCGGGGAGCAGTGTTGGTGAGGTGGCAGCG
ACGGCCAACCGGTACGTTGGGCCACAGCCAGCGGCGGGGCGGAGCTACCTGGTGCGGCTG
CAGGGCCTGCTGCTCCGGCCCGTGGTGGGGCATCACGATGGCGGTGTAAGTGTTGACAGT
GAGGGTGGGCGAGCGGTGGCGGCTGAGGTGGGGAGCGGCGTGGTGGTGGTGGTTGATGAT
GGGCATGAGCTGCGGGATCGCTGAGTTACCGCTGTGAGGGCCATACATCATGAGTGTAGG
GAGAGAGGGTGTATGGTTTTGGCGTGTATGTAGATTAACATATGTATGTATGGTTGTTAC
AAAGAGAGGAGAGGAGAGGAGATTCCTTGGAAGATTGTTACCATAGTAAATGGAGAGGTG
TTATATGTNAAAAAAAAAAA

Homology of Contig U35_23242 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g05280.1	387	1e-109	protein\|zinc finger family protein, putative, expressed
Brachypodium v1_2	Bradi2g40110.1	383	5e-110
Arabidopsis v10	AT3G47990.1	358	3e-81	\| Symbols: SIS3 \| SUGAR-INSENSITIVE 3 \| chr3:17713367-17716051 REVERSE LENGTH=358