barSeed - Barley Seed Development Database

Probe CUST_40420_PI390587928

Source Contig U35_23245

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40420_PI390587928	Hv_44K_v2	AGGAGAAGAAGGTCAACCCCAACCCCAGGGACCTCTTCACCTTCTCCTACAGGTTCAACA	487	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364505	3190	2e-24	277 - 336	100	60 / 60	plus	ABC12340 ABC13209 ABC25476
MLOC	AK375446	1107	2e-24	274 - 333	100	60 / 60	plus	ABC25476 ABC43512
MLOC	MLOC_11060.3	988	2e-24	513 - 572	100	60 / 60	minus	ABC25476
MLOC	MLOC_11060.2	1208	2e-24	742 - 801	100	60 / 60	minus	ABC25476
MLOC	MLOC_11060.1	1436	2e-24	782 - 841	100	60 / 60	minus	ABC25476 ABC43512
JLOC1	JLOC1_7283.1	1398	8e-25	478 - 537	100	60 / 60	plus
Harvest21	ABC17235	675	3e-25	488 - 547	100	60 / 60	plus
Harvest35	U35_23245	676	3e-25	488 - 547	100	60 / 60	plus

Contig Sequence (676 bp)

>U35_23245 676 Hv_44K_v2
CTGAAGCGCAGCGCAGCAACCCAGAGTTGAAAACCTCTCCTCTCCGCTGTAACAAACTTG
GGAAACTGTTGCCAAGACCCGGAAGAAGCCGGCCGGCCGGCGTGTAGGGCCTACCGGGAC
CGGACGGACCCCCGTTGCCTTTACTTGCAAGATTGCTCAACCCTGCTCCGTGCCTCGTGG
GCTGGTTTACTTATTGGCACGGCGACGGCGATCAAGCAGAGGGGCTCCCAACTCCCGAAT
AAGATCAGAAAAACACGGAGCGGAGAGAGGAGGATGACATCGCTGAGCCTCACGGCGTGC
CGGCATGCTGCAGCTCGTCCGCGTGCCGGCAGGATCACGGGCTGCGGCGGCGTCAGGGCG
ACACCACTCGGATCGAGGTCACGAAATGGTTTTGCTCCGAGCGCCTCATCGTCGTCGTCG
TCGTCGAGAGGGGTCACCACCTGCTCCCTGAAGCCGCCGCCGTCGTTCGGCGGCAAGGCG
AAGGAGAAGGAGAAGAAGGTCAACCCCAACCCCAGGGACCTCTTCACCTTCTCCTACAGG
TTCAACACCGACATCCCCATGGGCGAGACTCCAGGGGCATCCATCGACGAGTACCTCATG
AACAGGCCGAGGATCGTCGGCGCCGTGTTCCCCGACAAGCGCAAGCGCACCAAGCTCAAC
GACGAAGAGTGGAGCG

Homology of Contig U35_23245 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None