barSeed - Barley Seed Development Database

Probe CUST_40416_PI390587928

Source Contig U35_23249

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40416_PI390587928	Hv_44K_v2	TTCTACGAGTTCCCCGACATCCGACGCGAGATCCAGACAGAAACGGACAGGGAGGCTGGC	460	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368050	2822	7e-23	499 - 558	98	59 / 60	plus	ABC10920 ABC40367
MLOC	MLOC_43417.1	1096	7e-23	550 - 609	98	59 / 60	plus	None
MLOC	MLOC_43417.3	1097	7e-23	548 - 607	98	59 / 60	plus	None
MLOC	MLOC_43417.2	1002	7e-23	550 - 609	98	59 / 60	plus	None
JLOC1	JLOC1_28073.1	998	4e-23	546 - 605	98	59 / 60	plus
Harvest21	ABC25751	526	2e-22	461 - 520	97	58 / 60	plus
Harvest35	U35_23249	527	3e-25	461 - 520	100	60 / 60	plus

Contig Sequence (527 bp)

>U35_23249 527 Hv_44K_v2
GGGGAACCAAATCGGACGCCGCCGAGCTCCTCCCCTCTCGATCTAGGGATTCCCTCCCCC
TCCCCCTCCCTCACCCCAAAACCCTAGAGGCGGGTCCATGGCTGACGACCACTACAACCC
CGCCTCCGCGTCCGCGCCGTCTTCGGCGGCGGCGGCGGCGGCCGAGGCCGCGGCGGTGGT
GGGCTCCTCGGTGATCCCGATCGTCAACAAGCTGCAGGACATCTTCTCGCAGCTGGGGAG
CAGCTCCACCATCGACCTGCCGCAGGTGGCCGTCGTCGGCAGCCAGAGCAGCGGCAAGTC
GAGCGTCCTCGAGGCGCTCGTCGGCCGCGACTTCCTCCCGCGCGGCTCCGACATCTGCAC
GCGCCGCCCGCTCGTCCTCCAGCTCGTGCACCAGCCGCGACGCCCAGCCGACGCCGACAA
GGACGAGTGGGGCGAGTTCCTGCACCACCCCGGCCGCCGCTTCTACGAGTTCCCCGACAT
CCGACGCGAGATCCAGACAGAAACGGACAGGGAGGCTGGCGGCAACA

Homology of Contig U35_23249 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g69130.2	783	7e-52	protein\|dynamin family protein, putative, expressed
Brachypodium v1_2	Bradi2g58980.1	819	3e-51
Arabidopsis v10	None