- Probe CUST_40351_PI390587928
- Source Contig U35_29815
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_40351_PI390587928 | Hv_44K_v2 | GAGTACGTACTAACTAATTCAAGGACACATGCGTGCACAACCGTTGCAACTTCCAAAAAA | 403 | GeneList: greenyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 8.277 | 5.565 | 0.882 | 0.681 | 0.941 | 0.836 |
| Raw | 62.934 | 62.934 | 8.722 | 10.085 | 3.448 | 2.619 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_10689.1 | 3075 | 7e-23 | 296 - 352 | 100 | 57 / 57 | minus | ABC21251 ABC29300 |
| MLOC | MLOC_10689.2 | 2133 | 7e-23 | 211 - 267 | 100 | 57 / 57 | minus | ABC21251 ABC29300 |
| MLOC | MLOC_10689.3 | 2383 | 7e-23 | 202 - 258 | 100 | 57 / 57 | minus | ABC21251 ABC29300 |
| MLOC | AK355198 | 2276 | 3e-21 | 2011 - 2067 | 98 | 56 / 57 | plus | ABC21251 ABC29300 |
| JLOC1 | JLOC1_7009.2 | 2274 | 4e-23 | 1869 - 1925 | 100 | 57 / 57 | plus | |
| JLOC1 | JLOC1_7009.1 | 2534 | 4e-23 | 2129 - 2185 | 100 | 57 / 57 | plus | |
| Harvest21 | ABC29300 | 474 | 3e-25 | 404 - 463 | 100 | 60 / 60 | plus | ABC29300 |
| Harvest21 | ABC21251 | 632 | 6e-22 | 107 - 163 | 98 | 56 / 57 | minus | ABC21251 |
| Harvest35 | U35_29815 | 474 | 3e-25 | 404 - 463 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_15333 | 1309 | 1e-23 | 859 - 915 | 100 | 57 / 57 | minus | |
| Harvest35 | U35_7556 | 705 | 6e-22 | 470 - 526 | 98 | 56 / 57 | plus |
Contig Sequence (474 bp)
>U35_29815 474 Hv_44K_v2 GCGAGCGGCCTCCCTCGGCAGCTACATGGGCACGGTGCTCGTGACGGCGGTGCAGAGCGC CACGCGGGGCAGCGGCGACTGGCTCCAGGACAACATCAACCGGGGCAGGCTGGACGCCTA CTACTGGCTCGTCACCTGCCTCATGGTGCTCAACCTTGGCTACTACCTCATCTGCTTCCA TTTCTACACCATGAAGCCATTGGAGTTGGCGGAAGACGGTGACCACCACAAGGAGTGCGA GCTGCCCTCCATCCACAAAAATGGCAACGGCGGCGCCGCCAGCGGCTTGGTATAAGAATA AGATCGAGTAGTCGGAGGGTATAGTATAATTACGCAGTAGTCGGAGGGTATAGTATAATT ACGCCGAATCTGGTTAGTAACTGTATACTGTAGTAAGTATATGGAGTACGTACTAACTAA TTCAAGGACACATGCGTGCACAACCGTTGCAACTTCCAAAAAAAAAAAAAAAAA
Homology of Contig U35_29815 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |