barSeed - Barley Seed Development Database

Probe CUST_40346_PI390587928

Source Contig U35_17841

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40346_PI390587928	Hv_44K_v2	AATAAGATCACTTGATGTTCTTCCCTATACTTATTGTCTGTCGTCTCTCTACGATTTACC	345	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4110.2	525	2e-24	321 - 380	100	60 / 60	plus	ABC09498 ABC14039
MLOC	MLOC_4109.1	1858	2e-24	1322 - 1381	100	60 / 60	minus	ABC09498 ABC14039
Harvest21	ABC09499	569	3e-25	348 - 407	100	60 / 60	plus
Harvest35	U35_17841	570	3e-25	346 - 405	100	60 / 60	plus

Contig Sequence (570 bp)

>U35_17841 570 Hv_44K_v2
GCCCAAATCCACCGCCGTGGAGGAGAGGAGGCCACAGCCGAGCGCCGACGCTAGAAGGAG
GAGCCGCGCTGGAGGGCTTCCTTCCTTCACGCGCCGGAAGGCGTCGTCGTGTCGTGCACC
GACCGTTGTCTGCTGCCACCGATGTGTGTTAGGCGGCAAGCCGCCGCGCTTGGAGCAGCC
TGGCCGAAGGATGCAGCCACTGGTGTCGCCGTCCATCGAGGAACTTGGCCGAGGGGGCGT
CTTCTGGGCCATGGGTTGCCGTCAGAGTTTACCTTGGACAGTATTGATACGCCGCCCTGG
AGGTTAGTGCTTATTGTGTTGGAACAGGAGAAAATAAATAAATCGAATAAGATCACTTGA
TGTTCTTCCCTATACTTATTGTCTGTCGTCTCTCTACGATTTACCTTCTGCAGATCGTGT
TTGAGGCGTTTGGTCCTTGAATCGATGTATTCTTCTCTATTCTTCTGATATGAACTCAGA
TGGATGTAATTTTCGTGAGCACATAGATGTATGCGCGAGAAAAATTATGAATAGATCGTT
GATTCATGGGAAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_17841 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None