barSeed - Barley Seed Development Database

Probe CUST_40264_PI390587928

Source Contig U35_4458

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40264_PI390587928	Hv_44K_v2	CTCACCCATGTTAATTTGGTCTTGTGTAGCTTAATACTACTCTGTTCCTAAATATAAGTC	1158	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.526	0.665	1.431	2.289	1.055	1.283
Raw	340.087	686.189	1304.417	3202.970	528.744	694.511

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_10652.4	1187	8e-25	1072 - 1131	100	60 / 60	plus
JLOC1	JLOC1_10652.3	1838	8e-25	1723 - 1782	100	60 / 60	plus
JLOC1	JLOC1_10652.2	1298	8e-25	1183 - 1242	100	60 / 60	plus
JLOC1	JLOC1_10652.1	1293	8e-25	1178 - 1237	100	60 / 60	plus
Harvest21	ABC09645	1136	3e-25	30 - 89	100	60 / 60	minus	ABC09645
Harvest35	U35_4458	1247	3e-25	1159 - 1218	100	60 / 60	plus

Contig Sequence (1247 bp)

>U35_4458 1247 Hv_44K_v2
AGCTTCCCTCGCCTCCCCCAGACCCGAAGGATCCCAGCGGCGAAGAAGGAAAAAATATCG
CGCCTCCCCCCCGCCGCCGATCGAAAAATATCGCGCCTCCCCCCGCCGCCGATCAGCGCC
TCCGGTTCTGGATCCCCGTGCGGATCCGCAGCACCGACCTCCGAGTCGAGCCCAGGCAAG
GTGCTGCTACTGTTTGGTCATTTGGTGTGTATCCACTACCAGTTGTGGGCACTGAGTGAA
GTGAAGTGCTGGCATGGGGGGCGTGTTTGGACGCCACGACGCCGGCAGGCAGAGCTCCCA
CGGTATGAAGCTAGAGTCGAAGATGGTGGAGTCCATGAAGCAGAGAGCGTCGCATGGAAC
TTCGGTCAAGTCGTTCAACAGTATTATCATGAAGTTCGCGAAAATCGACAAGGGCTTGAG
AAAATGCAAGACTATCTTTCAGCAATTCGATGAAGATTCCAATGGTGAAATTGATAAAGA
AGAGCTCAAGAATTGCTTTCAGAAGCTGGAAATCTCATTCACAGAGGAGGAGATAAGTGA
TCTCTTTGAAGCTTGCGACATAAATGAAGATATGGGCATGAAGTACAATGAGTTCATTGT
CTTTCTGTGCCTTGTTTATCTTCTCAATGACCCTGCTGCATCAGAAGCAAAAACAAAGAT
GGGATTAGGAGATCTTGAGTCAACTTTTGAGACCTTGGTTGATGCATTTGTCTTCTTGGA
TAAGAACAAGGATGGGTATGTGAGTAAGGATGAGATGATTCAAGCAATAAATGAGAGCAT
ACCAGGGGAACGCTCTGCTGGCCGTATAGCCATGAAAAGATTTGAGGAGATGGATTGGGA
CAAGAACGGGATGGTTACCTTCAAGGAATTTCTGTTTGCATTCACTCGCTGGGTTGGGAT
AGGCGAAAACGAGGACGAAGATGAATGAATGATGTGGAAGCTGACAGCCGAAGAATGGCT
GACTATAAATTGGTTGCGTGGTGGTTTTATCTTTCTGTTAATAGTGACTCGGCATGTTCC
ATAGAAGGACTGACATGTCTGAACACCTGTACCAAACAGTGTCTGTGACGGCTTCGCCTC
CATTGCAAGTTATGTTGTGTAGTAAGCAAAATATTGAAACATTGATAGCAAGAGGGCTCG
TGTCAGCAACAACCTTGGCTCACCCATGTTAATTTGGTCTTGTGTAGCTTAATACTACTC
TGTTCCTAAATATAAGTCTTTTTAGAGATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_4458 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g40720.1	225	8e-136	protein\|EF hand family protein, putative, expressed
Brachypodium v1_2	Bradi1g36230.1	225	7e-146
Arabidopsis v10	AT4G26470.1	231	2e-101	Calcium-binding EF-hand family protein \| chr4:13371377-13372343 FORWARD LENGTH=231