barSeed - Barley Seed Development Database

Probe CUST_40240_PI390587928

Source Contig U35_4482

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40240_PI390587928	Hv_44K_v2	TGCTAAAGCAAAACTGATACTTAAATTTATTGCGCACAATCGCACAAAATGCCATGTCGT	1253	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360285	3555	2e-24	2117 - 2176	100	60 / 60	plus	ABC01846 ABC24430
JLOC1	JLOC1_49617.1	2074	8e-25	1738 - 1797	100	60 / 60	plus
Harvest35	U35_4482	1313	3e-25	1254 - 1313	100	60 / 60	plus

Contig Sequence (1313 bp)

>U35_4482 1313 Hv_44K_v2
CATGGGCGGGCACATCGGGTTCGCGCCCATGTTCGCCAGCCACGCGGCGGCCGCAATACC
GGGGCTGGAGCTCGGCCTGTCGCAGGAGGGCCACATCGGGGTGCTCAGCCAGTTCTACCA
CCAGGTCGGCGGCGCCGGGGCCAGCGGGCAGCTGCAGCACCCGCACCCTCATCAGCACCA
CCACCACGAACAGCACCACCATCACCAGCAGCAGCAGCAGGAGGAGGACGGGGAGGAGGA
GCGCGAGGACGGCGACTCCGAGGAGGAGTCCGGCCAGTAGCAGGCTGTCGTCCAGTTACC
AGTTATCACCACATCTGTTTCTGTTAATTTCTGCAGAAGGAGAAACCAAGGAAGGAGAGA
AAACTGTATGCACGCAGCTATGGCGAAGCTTTGATTACCTTTAGGTTGTTGTTGTTGTTG
TTCTTGGGGTTGTGATGAGTTTTTATGTCGATTTTTTTCACTTGTGGTGTCCAAAACTCA
AAAGAGGCTTCTTGCTCTGGGGTTTTAGTGGAATGGATCAGGGTCATCCTCAGTTCTACT
CCTGCTGCTCTTTTGATCATCGCCAGAATTCCCTCCGTTCAGGTGTATAATAGCTGAGAG
CTGGATGATTTCGATCGTCCTCCCTAGAGTGAGTGCCTTTATTTATTGTTATTGCAAGGT
GTGTAGATATTCAGGTAATTTTGCAGCTAGGGAGGTCTTCTTTTATAGGAGCAGTGATCT
GCTCTTGAGCGATCAAGATGATGGCTGGCAATTTTATCCTCCCTTCACGGCCAATTCCTG
CAACGAAAATATGATACAATAATAAACATTTCTAGATCCTTGATTCTATACGCTTATTTT
GTTAGACAATATTTTATATAGCATTATCCTTACTTGCTTCATCTGTGTTGGACCAGTGGT
TCTCTTGATTTTTTTTCTCACCAGCATAAAAGTCACACTACTTGCTCTTGCTGAGTTATG
TAGTTTATTTGACTAAAACCATGACAATAACTATGGAATGGAGGGAGTAGTATATTTGTT
AACTAGGTGGAACTGTCTATAAATATGGTAAGGTAGTAGGATTTTCAGGATATGTGTAAT
TTTAGTTGGTATGGAGAAATGTATTTAGTATGTCCATGCGCACGGATACTAACTAAGTGA
CTCAATCAAACTAAAAAAAAAGTGAAAAGACAAAAGAAAATGCTTGCCTGAATCTTACCG
TANAATCAATGACATATGACTTACATGTGCAATATTTAGAGCACATCTAGATGTGCTAAA
GCAAAACTGATACTTAAATTTATTGCGCACAATCGCACAAAATGCCATGTCGT

Homology of Contig U35_4482 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None