barSeed - Barley Seed Development Database

Probe CUST_40197_PI390587928

Source Contig U35_19208

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40197_PI390587928	Hv_44K_v2	GCTACTCAAAATGTATGTAGAGAAAATACACACACGGCATGTATAGTCGCACCGTACCCC	1395	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367623	2353	2e-24	2217 - 2276	100	60 / 60	plus	ABC11274 ABC12751
MLOC	MLOC_52165.1	2131	2e-24	2014 - 2073	100	60 / 60	plus	ABC11274 ABC12751
JLOC1	JLOC1_33387.2	2056	8e-25	1920 - 1979	100	60 / 60	plus
JLOC1	JLOC1_33387.1	2063	8e-25	1927 - 1986	100	60 / 60	plus
Harvest21	ABC12751	911	3e-25	791 - 850	100	60 / 60	plus	ABC12751
Harvest35	U35_19208	1515	3e-25	1396 - 1455	100	60 / 60	plus

Contig Sequence (1515 bp)

>U35_19208 1515 Hv_44K_v2
TTCTCCAGGATGAAGTTCCTGAACCTAACGCAAGACCTAGTCTCAGTATGGTGGGAAGAA
AGGCATCATTTAGACTTTCATGGGGATGCAATGGGAACAAAAACGGCCAGCACAAGCATG
ACTTTGTTTCCTTTGAAAAAGGAGACATTACAACCGCAGAGCGCAGCAGTAAACAGATCT
TGCTGAAGTGGGAATCCCGGCCACAAACAGTGCTTTTCATAACCAAACCTAACTCCAACT
CTGTTCGTGTTCTCTGTGCTGAAATGGTCAGATGGCTTAAAGAGCACAAAAATATTAATG
TCTTTGTGGAACCCTGGGTTAGCAAGGAACTTCTAACAGACGATTCTAACCACACAGTGC
AAACATGGGATAATGATGACGACAAAAAGATGTTGCACAAGAAGGTTGACCTCATTGTAA
CTCTCGGCGGTGATGGAACTGTTCTATGGGCGGCATCATTGTTCAAAGGACCAGTTCCTC
CAGTTGTTGCTTTCGCCATGGGATCGCTGGGTTTCATGACACCTTTCCAAAGCGAGAAAT
ACCGTCATTACTTGGACAACGTGCTGAAGGGGCCTTTTAGCATAACGCTGAGAAACCGTC
TCCAGTGTCATGTAATCCGGGACGCAGCCAAGGACGAGCTCGTGACTGAGGATCCAATCC
TAGTACTGAACGAAGTTACAATCGACCGCGGAATATCATCCTACCTTACCTACCTTGAGT
GCTACTGCGACAGTTCATTCGTCACATGTGTACAAGGGGATGGACTCATCATATCAACGA
CATCAGGAAGCACAGCATATTCGTTAGCGGCCGGAGGGTCCATGGTTCACCCACAGGTCC
CCGGCATCCTGTTCACGCCGATCTGCCCCCACTCGCTGTCGTTCAGGCCGCTGATCCTGC
CGGAGTACGTGACGCTGCGCATCCAAGTGCCGTATAACAGCCGGGGCCACGCGTGGGCGT
CCTTCGACGGCAAGGACCGGAAGCAGCTGGCCCCCGGCGACGCGCTCATCTGCAGCATCT
CCCCCTGGCCCGTGCCGACGGCGTGCCTCGTCGACTCCACCACCGACTTCCTCCGCAGCA
TCCACGAGGGCCTTCACTGGAACCTCAGGAAGACGCAGTCGCTCGACGGCCCGCGCGACT
GAAGGACTGATAAATGAAATCTGTGTTGAGCCGGGCAAAAGGCAGGGCGCCCGTGGATTT
GAATCGTGTTCCTTTTATTGTTTACATGTAGAAGTTGGCCGGAGGTGGTAGTAGTGGCAT
GTATACAGTGAGTGAGTGGCCACGGGTTGCTTGAGCTTGATGCAATGTATGACAGCTCAA
GTGGCAAGCGACGATGCGCTCGTGTGGGCGTAGTATGGGGTAGTAGATGTGGCCATATGG
ATATGGAAATTGGCTGCTACTCAAAATGTATGTAGAGAAAATACACACACGGCATGTATA
GTCGCACCGTACCCCCCTCCCCCCATGATGTGAATGAAATAATACATTCGTTGGTCAAAA
AAAAAAAAAAAAAAA

Homology of Contig U35_19208 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g72690.2	533	protein\|NAD kinase, putative, expressed
Brachypodium v1_2	Bradi2g61240.1	532
Arabidopsis v10	AT3G21070.1	530	\| Symbols: NADK1, ATNADK-1 \| NAD kinase 1 \| chr3:7380434-7383874 REVERSE LENGTH=530