barSeed - Barley Seed Development Database

Probe CUST_40186_PI390587928

Source Contig U35_13662

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40186_PI390587928	Hv_44K_v2	CCAAAACATCATGTGGTTCTTGATAGTTGTTATATGTAATCAGCATGTCATGTGCACATT	711	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63762.1	2031	3e-21	820 - 879	97	58 / 60	minus	ABC00122 ABC06549 ABC42046
MLOC	MLOC_18082.1	444	3e-21	1 - 54	100	54 / 54	minus	ABC00122 ABC31645
JLOC1	JLOC1_12505.1	444	2e-21	1 - 54	100	54 / 54	minus
Harvest21	ABC00122	791	3e-25	712 - 771	100	60 / 60	plus	ABC00122
Harvest35	U35_13662	791	3e-25	712 - 771	100	60 / 60	plus

Contig Sequence (791 bp)

>U35_13662 791 Hv_44K_v2
CGTCCGCACATTCCCCCTTCCTCCTCCACCTCCATCCCGCTCGCAGCTCGAACCAAGGAG
AGGTCGTCAGCCATGTCCGGGCGCGGCAAGGGAGGCAAGGGTCTCGGCAAGGGCGGCGCC
AAGCGCCACAGGAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGT
CGCCTGGCGAGGAGGGGCGGCGTGAAGCGTATCTCCGGCCTCATCTACGAGGAGACCCGC
GGCGTCCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCAC
GCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGGCCGC
ACCCTCTACGGCTTCGGCGGCTAGGCTCTTCCTCGCCCCCCCTGCAGATTCCGGTGTGTT
TACCTGCCTGTGCGCGGAGTCCATCTGTCGAAAAATCTTAGATGAACCGAAATCCCCATG
TTTATTGCCACTGTTTCTGTTTCATTAGTAGGTTCATACTGTATCCTGAGACGAAACTTT
CACATCTGGAGTTAAACTTGTTTCTGAGCAAACGCTGTGTTTCTGCTCTGGTTTTTTATG
TTCAGACTGTATGAATATGATTGTTGTTCCTCCTGTCATGCAAGTTTATCTGCAGAGCAG
ACAGTAAATAAAAAAAAAAAAATAACTTGTGATATGAATGATCTTTATTGGCCAAAACAT
CATGTGGTTCTTGATAGTTGTTATATGTAATCAGCATGTCATGTGCACATTTCTGTTTAA
AAAAAAAAAAA

Homology of Contig U35_13662 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None