barSeed - Barley Seed Development Database

Probe CUST_40157_PI390587928

Source Contig U35_13674

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40157_PI390587928	Hv_44K_v2	GCATAGTTCTCGGAGTAATGAAGCCCTTTAAGTTGATCCTATTTGTATCTATGTAATATG	1170	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375808	1890	2e-24	660 - 719	100	60 / 60	minus	ABC00003 ABC00255 ABC06549 ABC34401 ABC42046
MLOC	MLOC_63762.2	798	2e-24	601 - 660	100	60 / 60	plus	ABC06549 ABC42046
MLOC	MLOC_63762.1	2031	2e-24	220 - 279	100	60 / 60	minus	ABC00122 ABC06549 ABC42046
MLOC	MLOC_63762.3	924	2e-24	93 - 152	100	60 / 60	minus	ABC06549 ABC42046
MLOC	MLOC_63761.1	801	2e-24	93 - 152	100	60 / 60	minus	ABC06549 ABC42046
JLOC1	JLOC1_41804.1	921	8e-25	665 - 724	100	60 / 60	plus
Harvest21	ABC06549	850	3e-25	636 - 695	100	60 / 60	plus	ABC06549
Harvest35	U35_13793	850	3e-25	636 - 695	100	60 / 60	plus
Harvest35	U35_13674	1335	3e-25	1171 - 1230	100	60 / 60	plus

Contig Sequence (1335 bp)

>U35_13674 1335 Hv_44K_v2
TATAGGGCGAATTGGGCCCTTTCCAAGATGCTCGAGCGGCCGCTCCAGTTCCCAGAACTG
GGCATCGGCGGCATGCGGAGCCACCATGTATGATCACCAGCAGCAGGCGCCATCTGCCCA
ACTTATTGTTCAGAACATGACTGAATCCCTGACCGTCAGCTCCCTGCAGCAGCAACTCTG
ACAGCAGCCTCGTTCGACCACACCACTGCTGTACATCAGCAGCTCATGTTTTGACGAATC
TTTAGCCAACCAACGGAAGCCGAAAGGCGCTACCATCGCTGCTAAAAAGAATCCTTCTCA
GTCAGTTTGTTATTCCGTAGGAAAGAAACAAGGTGTATAGGGGGAAATTGAATTTGTCAG
TGTAAAGCATATACTGACCATAGCCGATTCAACTTGTAAAATATAAATGGATTCTTAACT
CTAATGTAAACTATGCTGCAGTTTTGCCATGAAAAAAGTTGGGCAGCTAACATCCTCCAA
GTATAGGGCGAATTGGGCCCTTTCATAATGCTCGAGCGGCCGCTGGACTACCCAAGAGGT
GATAACATCGTGCGAGAGACTTGCCGGCCAAGATGCCAATGTGACTACAGTGCCTGTCTC
AGTTTTGCGATTGACACGGCAGCTGACTCGGTTGTTTGAGTGGACGAATGATGTTGCTGA
TAGATTGGCATTTTCAGATGTTTTGACAAGCGATACTGTCTTCTCAGTTCCTATGACTGA
GACATATAGCCTTCTCGGTGTGGACGCAAAAGACGTCAGTTCACTGGAGAAGTATCTGCA
GGATTATTTCACCAACATACTGAAGAAGTTGAAAGACCTTAAGGCTCAATCAAAGCAAAC
AGATATTTTCTTTTGAGAGGAATACTTGTTTATGTTGTTGTAAAAGTAATATACACTGTG
ACAGGGATACATCAGCAGAGGCATGCTCCTTTTGGAACTTGCAATCTTTCTTTCTTTTTT
TCCTAGTTTGTTCCTCGTGTATTCATGAATTTGTAAAGGTTATACGATTTATTTAGTTAG
CGGCCGCTGCTCTGCACCCCATCATCATCTAGGGGCTCAACTAGAAGAACGCCTTCGGCC
TTCGGCCGCGATGACATCATTGCCGCCGTGCTCACCGATGTTGGCGTTTCATGTTTCTTC
GTGAGCATCAGGACAAAGAAATCGGAAGAAGCATAGTTCTCGGAGTAATGAAGCCCTTTA
AGTTGATCCTATTTGTATCTATGTAATATGATTGTAAACTTGTAGAGAAGATTGCTTCTT
GTTGTTATCTGATTGTAAACTTCATGCTGATCACATTTGTATATGCGTTATATGATGTAG
CAGATTATATTGCTT

Homology of Contig U35_13674 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g44000.1	387	2e-55	protein\|uncharacterized protein ycf39, putative, expressed
Brachypodium v1_2	Bradi3g42580.1	390	7e-54
Arabidopsis v10	AT4G35250.1	395	1e-54	NAD(P)-binding Rossmann-fold superfamily protein \| chr4:16771401-16773269 REVERSE LENGTH=395