barSeed - Barley Seed Development Database

Probe CUST_40144_PI390587928

Source Contig U35_25651

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40144_PI390587928	Hv_44K_v2	TATCAGAAGCTAAACATTGCTTGAAGACTGCTGTTACATATATACATTCTTCGGATAGAG	385	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.916	1.106	1.670	0.775	0.708	0.633
Raw	20.958	16.534	25.036	14.419	4.684	4.795

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19714.2	4230	2e-24	2832 - 2891	100	60 / 60	minus	ABC15698
MLOC	MLOC_19714.4	4186	2e-24	2759 - 2818	100	60 / 60	minus	ABC15698
MLOC	MLOC_19714.1	4313	2e-24	2893 - 2952	100	60 / 60	minus	ABC15698
JLOC1	JLOC1_13662.4	4458	8e-25	1362 - 1421	100	60 / 60	plus
JLOC1	JLOC1_13662.3	4440	8e-25	1340 - 1399	100	60 / 60	plus
JLOC1	JLOC1_13662.2	4427	8e-25	1331 - 1390	100	60 / 60	plus
JLOC1	JLOC1_13662.1	4406	8e-25	1306 - 1365	100	60 / 60	plus
Harvest35	U35_25651	498	3e-25	386 - 445	100	60 / 60	plus

Contig Sequence (498 bp)

>U35_25651 498 Hv_44K_v2
GTTGGCCTACTGATTGCAAGTGACTTTTTTGAGATTCTGAGCAAATATTTTCCTGTCTAC
TTCACACATGGAGCCGGTGATAATTTAGGTGTTACAAGAGACGAGCTTTCTAGGGCATTG
ATGCATGCCTTCTGTGCAAGCCCGTATTTCGAGCCCTTTGCCATTCCATTGCTTTTAGAT
AAACTTTCTTCCTCTCTTCCATTAGCAAAGCTTGATTCCTTAAGATATTTGGACAATTGC
ATTCAGTGCTATGGAGCTGATAGAATGGTTGCACACGCATCAGCTATTTGGTTTAAGTTG
AAAGAAGTGCTTTTTAGCCTTTCTTCAGATCAACTTTTATCATCAGGGTCACCTAAAGAT
GCAGAGAATAATAAGAATGAAATAATATCAGAAGCTAAACATTGCTTGAAGACTGCTGTT
ACATATATACATTCTTCGGATAGAGATATTTTCATNCATTTGATCTTGTTGGATGACGAT
ATTGTGAATAACATCCAT

Homology of Contig U35_25651 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g55667.1	1143	3e-53
Arabidopsis v10	None