barSeed - Barley Seed Development Database

Probe CUST_40120_PI390587928

Source Contig U35_13684

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40120_PI390587928	Hv_44K_v2	GTTTGCTGTCTTCTGTAGAATCGAACGGAATCGAATGGAAATTGGTGTGGATTATGCCTG	427	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11898.1	439	2e-24	212 - 271	100	60 / 60	minus	ABC00139 ABC00163 ABC00203 ABC00695 ABC00877 ABC30604 ABC32179 ABC37444
MLOC	MLOC_11897.3	1729	2e-24	1502 - 1561	100	60 / 60	minus	ABC00139 ABC00163 ABC00203 ABC00695 ABC00877 ABC13704 ABC26541 ABC30604 ABC32179 ABC37444
MLOC	MLOC_11897.4	1733	2e-24	1506 - 1565	100	60 / 60	minus	ABC00139 ABC00163 ABC00203 ABC00695 ABC00877 ABC13704 ABC26541 ABC30604 ABC32179 ABC37444
JLOC1	JLOC1_7934.1	380	8e-25	153 - 212	100	60 / 60	minus
Harvest21	ABC30604	550	3e-25	459 - 518	100	60 / 60	plus	ABC30604
Harvest21	ABC00139	521	3e-25	428 - 487	100	60 / 60	plus	ABC00139
Harvest21	ABC37444	295	1e-23	50 - 109	98	59 / 60	minus	ABC37444
Harvest35	U35_30609	550	3e-25	459 - 518	100	60 / 60	plus
Harvest35	U35_13684	538	3e-25	428 - 487	100	60 / 60	plus

Contig Sequence (538 bp)

>U35_13684 538 Hv_44K_v2
GCTCCACCTCACAAGGATAAGTCACCCTCACCGGAGAGAAGCGAGAAGATGTCGGGCCGC
GGCAAGGGAGGCAAGGGGCTCGGCAAGGGCGGCGCCAAGCGCCACCGGAAGGTCCTCCGC
GACAACATCCAGGGCATCACCAAGCCGGCGATCCGTCGTCTCGCGCGCAGGGGCGGCGTG
AAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGGGGCGTGCTCAAGATCTTCCTCGAG
AACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTCACCGCC
ATGGACGTCGTCTACGCACTCAAGCGCCAGGGGCGCACCCTCTACGGCTTCGGAGGCTAG
GCCACCAACCAGATTTAGAGAGTTCTAGGGTTCGTGGTCGTTGGTGTAATGGCAGCATCT
CGCTGTTGTTTGCTGTCTTCTGTAGAATCGAACGGAATCGAATGGAAATTGGTGTGGATT
ATGCCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTGCCTGATCCCCCA

Homology of Contig U35_13684 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi5g19360.1	104	5e-51
Arabidopsis v10	AT5G59970.1	103	5e-51	Histone superfamily protein \| chr5:24146352-24146663 REVERSE LENGTH=103