barSeed - Barley Seed Development Database

Probe CUST_40096_PI390587928

Source Contig U35_37642

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40096_PI390587928	Hv_44K_v2	CAAATTTTATTAGCACAACCGAACATAAGATTGATAATGGCCTCTTCCTGCGCACAGAAA	13	GeneList: plum1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.220	0.222	0.575	1.757	2.389	2.196
Raw	3.505	5.732	18.642	91.284	42.425	41.475

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357138	1787	2e-24	1706 - 1765	100	60 / 60	plus	ABC00169 ABC00411 ABC00902 ABC00930
Harvest35	U35_37642	624	3e-25	14 - 73	100	60 / 60	minus

Contig Sequence (624 bp)

>U35_37642 624 Hv_44K_v2
CTTTTTTTTTTTTTTTCTGTGCGCAGGAAGAGGCCATTATCAATCTTATGTTCGGTTGTG
CTAATAAAATTTGACTACATGCTTTGCTTTCACAACAAAACAAAGGAAGTCATACCTGCA
ATTTCTTACAGTACAAAAACTCTTCGTTCATTATTATGTGGCACTGAACCGTCAGAGCAT
ACGAATCAATCTGACAAGTTTTTTACTCTGCTAACCACCGAACATCACAGATGCAACAGC
AAAACAGGGACAGAGAAGAAGGAACGGCATAGAAGTGCACAACACTGCCACCCAAATTAA
GCACGACCGATCAACTCAGTACTCATCAACTTCGTCGTCGTCGTCTTCACCCTCAGCTCC
GACCTCCTCGTAGTCCTTCTCCAGCGCGGCCAGGTCCTCCCTGGCCTCCGAGAACTCCCC
CTCCTCCATCCCTTCCCCGACGTACCAGTGCACGAACGCGCGCTTGGCGTACATGAGGTC
GAACTTGCGGTCGATGCGCGAGAAGACCTCGGCCACCGCCGTGTTGTTGCTGATCATGCA
CACCGCCCGNCGCACCTTGGCCAGGTCCCCTCCCGGAACCACCGTCGGCGGCTGGTAGTT
TATCCCGCACTTGAACCCAGTCGG

Homology of Contig U35_37642 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None