barSeed - Barley Seed Development Database

Probe CUST_40036_PI390587928

Source Contig U35_22230

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40036_PI390587928	Hv_44K_v2	AGAGGGGATGGAAGAACTTACATATCCACTATATACACAGAGAACTGGGTGAATTCACCT	598	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369429	1162	2e-24	592 - 651	100	60 / 60	plus	ABC11624 ABC11625 ABC44428
MLOC	MLOC_7434.2	1636	2e-24	565 - 624	100	60 / 60	minus	ABC11624 ABC11625 ABC44428
MLOC	MLOC_7434.3	1006	2e-24	563 - 622	100	60 / 60	minus	ABC11624 ABC11625 ABC44428
MLOC	MLOC_7434.1	2070	2e-24	1509 - 1568	100	60 / 60	minus	ABC11624 ABC11625 ABC15764 ABC44428
JLOC1	JLOC1_4897.1	2338	8e-25	463 - 522	100	60 / 60	plus
Harvest21	ABC18143	661	3e-25	599 - 658	100	60 / 60	plus
Harvest35	U35_22230	661	3e-25	599 - 658	100	60 / 60	plus

Contig Sequence (661 bp)

>U35_22230 661 Hv_44K_v2
GGAAACCTCAAACCCATCTGGCCGTCGACAAGCCCTCCGCCCCCTTTCGCTGTCGCCGAC
CCGCCGCCTCCGGCGAGAGCGACTCCACCTCACAACCGTCGGGCGTCCGGCCGTGCTCCA
CCGCCGACCCGTCTCATCTTCCTATCCAGGTCACCGTCCGCTGGCCACTCCCTTCGGATC
CTAGGCTCGTCTTCTCCGGATCCAAAGGTACTAGTGAGCTTTCGCCATGTCGAGGCTGCG
GGCGCTCTGGCAAGCTTCCGTGAACGCTACCAAGAGAGCTGTTGTATGGAATTCAGAAGA
TTTATTTCCACCAAGTGAAAGATACATCTTCAATTTCAATTCAAAAGATGAGGTGAAGAA
GTGGCACTTGTACTCGGATTCAGAGTATGGAGGTTTATCATCTGCATCACTGGAGATAAC
TGATAGTGTTTCTGGTGGAGATACTTCATCAACTGGTGTCTTTTCTGGCAACCTCTCCTT
GGATATGTCCGAGGGATCACCATGGAGGATCAGGCGAAGTGGTTTCTGCGGAATGCGATC
AAAGAAGTTTGATGGTTTCATCGATCTTGATTCATATGACACAATAGCAATTAAGCTCAG
AGGGGATGGAAGAACTTACATATCCACTATATACACAGAGAACTGGGTGAATTCACCTGG
A

Homology of Contig U35_22230 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g52720.1	230	2e-79	protein\|Complex I intermediate-associated protein 30 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g48720.1	230	2e-83
Arabidopsis v10	AT1G17350.2	236	3e-65	NADH:ubiquinone oxidoreductase intermediate-associated protein 30 \| chr1:5942391-5944330 FORWARD LENGTH=236