barSeed - Barley Seed Development Database

Probe CUST_40025_PI390587928

Source Contig U35_34214

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40025_PI390587928	Hv_44K_v2	GGTTAGTACTAACTTAAGTAATTTCTCCTTTGCATATACCTACCGATCAGTCTTTGGTTA	419	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_46569.2	1605	2e-24	491 - 550	100	60 / 60	plus	ABC05377
MLOC	MLOC_27504.1	2020	3e-21	494 - 550	98	56 / 57	minus	ABC05376 ABC05377
JLOC1	JLOC1_18562.3	1300	2e-21	1007 - 1063	98	56 / 57	plus
JLOC1	JLOC1_18562.2	1361	2e-21	1068 - 1124	98	56 / 57	plus
JLOC1	JLOC1_18562.1	1427	2e-21	1134 - 1190	98	56 / 57	plus
Harvest35	U35_34214	498	3e-25	420 - 479	100	60 / 60	plus

Contig Sequence (498 bp)

>U35_34214 498 Hv_44K_v2
TCGCTCTGACCACGTCAGCGTGTTCGTTCTCTTGGGTGGTGGTGAAGATCAAGTTGCTCA
AATCAACGCTCAAGAGGTTCATCGCTGACTCGGACCAGATGGCGCGGATCGTCAACGCGC
GCCATTACACTCCTTTCTCTCCTGTAATTTTCCTTCCTAATCGATCGCAGTTCGCCATCG
TCTCATCTATGCCGATCTCCACTTCCGAGCGTCCCCAGCGAAAGATGCAGTTAGTACTCG
TACACGGTTCTGCTTTCTTTGCCGCCATCAGACGCTGGCATGCACAGAAGCATCGCCCGA
TTCGCCTAGCACTAGTTGCTAGAGACACACGCTGAGTCCACATCGTGGTGTAGGCTCATC
TCTGAACCATCCAGTCCATCCCAGGTATTATACTATTCCCTAGTCCCTACCCCCTATAAG
GTTAGTACTAACTTAAGTAATTTCTCCTTTGCATATACCTACCGATCAGTCTTTGGTTAT
GAATTAAATTATAAATTC

Homology of Contig U35_34214 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None