barSeed - Barley Seed Development Database

Probe CUST_39935_PI390587928

Source Contig U35_19600

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39935_PI390587928	Hv_44K_v2	GTGTCGCCCCCTTGTTTAGCGGTGATTAGTATAAGTGTTTTTTCTTGATAAATTTCGAAA	1275	GeneList: floralwhite MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.411	0.688	1.748	2.223	1.276	1.009
Raw	155.958	379.354	905.834	1682.051	373.292	312.045

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_32376.2	1041	8e-25	956 - 1015	100	60 / 60	plus
JLOC1	JLOC1_32376.1	1043	8e-25	958 - 1017	100	60 / 60	plus
Harvest21	ABC14030	1377	3e-25	1280 - 1339	100	60 / 60	plus	ABC14030
Harvest35	U35_19600	1373	3e-25	1276 - 1335	100	60 / 60	plus

Contig Sequence (1373 bp)

>U35_19600 1373 Hv_44K_v2
GGGAGAGCGGAGGGGGCGCGTCGTCGTCACGGTGGCCCAAGACGGAGGTGCACGCGCTTA
TCCAGCTGCGCATGGACATGGACAATCGCTACCAGGAGAACGGACCCAAGGGCCCGCTGT
GGGAGGAGATCTCCGCCGGGATGCGGCGGCTGGGCTACAGCCGCAACTCCAAACGATGCA
AGGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAGGTGAAGGAGAGCAACAAGAGGC
GGCCGGAGGACTCCAAGACATGCCCGTACTTCCACCAGCTCGAGGCCATCTACCGCAAGA
AACACAACGGCGGCGGCGGCAGCGGCGCGGCCGCCAACAACGCCGCCGTATCTGTCTCAG
TCCCTGCCGTCGCGGAGCATCAGAACCTGAACCGGCACGAGATCGAGATCGAGATCGAGG
GGAAGAAGATCAACGACAACGACAAGAGGAACAACGGAGGAGTCGGAGCCGCGCAGGTGC
CGACAAGCAACGGGCAGACAACGCCGACGACGGCCACGTTCGACGTCGATCTGGGCGTAA
AAAAGAAGACACTGTGAGGGAGCTGAACGAGCAGCCGCAACGGGAGTTGACGACGGACGA
GACCGACAGCGACGACATGGGCGATGACTACACTGACGACGGCGAGGACGGCGAGGACGA
CGGCAAAATGCAGTACAGGATACAGTTCCAGAGGCCAAACCCGGTCGGCGCCAACAATGC
ACCTCCACCGGCAACCACCGCGACGACAGCAGCGCCGACATCGACTCCGTCGAGCTCCTT
CCTCGCCATGGTTCAATAAAGGCTCAGCACCATTGCTCATCCATCAGTATACTTCCAGTT
CCAGAGAAGCTATAACCTCGAAACATCACCATCACCGAGTCACCGCTCGAACATGCATCA
CCTCCTCGAGTCGATCATCGCCATCACATCACACCATCACCGACGACGGCGACTGTTCTT
TTTCACCTTGTAATTCCTCTCGTGCCATTCCATTATTTATTGATTCGTTCTGTGTAATAA
GAGAGCCTCTCTTCTGTCCCCCAAACCGGCCAAGGAGGCAGAGGGGGTGGCCGGTAGAGC
AAGCAAGTCCCTGCGTAACATAGGTGTTCATCCTCGTGTTAAGGCCAAAGAATTGTACAT
CGATGTAAGAGTCCCCTGATGTCTGTTTTTTTCTCTTCTTCTTTTTTCGGCGGTATACAG
GTTTGTATACGGGTATACAAGAGTTACATACATTTCAAGCAACTTGGATCAGAGGTCCAA
AGATTGTTTTAGCTGGTGTCGCCCCCTTGTTTAGCGGTGATTAGTATAAGTGTTTTTTCT
TGATAAATTTCGAAATAAGTGACTTTATATTTTACTAAAAAAAAAAAAAAAAA

Homology of Contig U35_19600 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g45750.1	529	7e-74	protein\|expressed protein
Brachypodium v1_2	Bradi5g17150.1	759	4e-72
Arabidopsis v10	None