barSeed - Barley Seed Development Database

Probe CUST_39921_PI390587928

Source Contig U35_21925

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39921_PI390587928	Hv_44K_v2	ATGAATCAAGTAAGCAAAGCCAAAATCACTGGACGATCGATGTAGAATTCCGCTCCGGTG	585	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54194.1	2374	2e-24	640 - 699	100	60 / 60	minus	ABC18508 ABC23547 ABC24266
MLOC	MLOC_54194.2	2557	2e-24	640 - 699	100	60 / 60	minus	ABC18508 ABC23547 ABC24266
JLOC1	JLOC1_34870.1	891	8e-25	595 - 654	100	60 / 60	minus
Harvest21	ABC18508	881	3e-25	586 - 645	100	60 / 60	minus	ABC18508
Harvest35	U35_21925	881	3e-25	586 - 645	100	60 / 60	minus

Contig Sequence (881 bp)

>U35_21925 881 Hv_44K_v2
CTGAGAACCAATCCTGCACCCAGTTACCCAGAATTCTGAGTACACAGCTTCCTGAAATGG
CGGTCAGCACCTGTAGCCTCTTGGCCGTTGCCATGGCCCTCGCTCTCCTAAGCGGCAACA
TGGCCCACGCCAGCCGCCTCCTGGCGGACACCACTGAGGCAGCATCCCCCACTGCAACGC
CTGCCGCCGTCCCAGGCATCGCCGCACCCAAGCCGCCGGTGCCCACCATGCCTACAATGC
CACCGGTGCCAACCGTGCCCACGGTCACCACGCCGCAGGTCACGGTGCCGCCGATGCCTG
CCGTGCCGGCGATCACCGTCCCGCAGCTCACCATCCCCCCCATGCCGACCGTGCCCGCGA
TCACCGTGCCCCAGGTCACGTTGCCGCCCATGCCGGCCGTCCCCACGGTCACGATGCCGC
CCATGCCCGCCGTTGTTGTGCCGAAGGTGACGATGCCGCCAATGCCTGCAATTCCATCCA
TCTCCATCCCCAAGATGACATTGCCTCCGATGCCTTCCATTCCTACCGTGAACGTGCCGA
TGCCGTTCCTCGCGCCACCTCCTTCGGCATAGGCCCGGAGCAGAGCACCGGAGCGGAATT
CTACATCGATCGTCCAGTGATTTTGGCTTTGCTTACTTGATTCATCATTGGTTCGGTGGT
GAATCTTGGTCATGACGGGTGTCATTCACCGTTCGCCACCTTGTTTACATCATACGGTTC
CTATCTGTGTGTGTGTTTGTGTAGTACGTACGTAGCATTAGGCTTGTCAATGGCCGTCTC
TTTTTCTTTCTCTTTGTATTGAGTGTTTACACTGGACATGTATGTCATTTTTATTACATT
TATGTCAGACATATACTGATATGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_21925 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None