barSeed - Barley Seed Development Database

Probe CUST_39904_PI390587928

Source Contig U35_21930

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39904_PI390587928	Hv_44K_v2	AAGCGGCAGTCATTTTGTATGTCAGAAAAAGTATCTTATATGCGCTGTTTTACCTTGTCT	630	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11370.4	3894	7e-23	3786 - 3845	98	59 / 60	plus	ABC21021 ABC22074
MLOC	MLOC_11370.1	5010	7e-23	1316 - 1375	98	59 / 60	minus	ABC21021 ABC22074
MLOC	MLOC_11370.3	2365	7e-23	431 - 490	98	59 / 60	minus	ABC21021 ABC22074
Harvest21	ABC21021	708	2e-22	631 - 688	98	57 / 58	plus	ABC21021
Harvest35	U35_21930	707	3e-25	631 - 690	100	60 / 60	plus

Contig Sequence (707 bp)

>U35_21930 707 Hv_44K_v2
GCCCACGTGGGGTGGTCAAAGTTTACCCACGCGAAGGCGATATCTGGGCTTTGTACCAAA
ACTGGTCCCCTGAATGGGATGAAGATACTCCAACTAATGTGCTGCATGTCTATGATCTGG
TTGAGATACTGGATGATTATGACGAAGATCAAGGAATCTCTGTCATTCCCTTGGTTAAGG
TTACTGGATTTCGAACAGTTTTTCAGCGTCACCAGAACCGGGACGTCATCAAGAGGATTC
CAAAAGGGGAGATGTTTCGGTTTTCACATCAGGTCCCCTTCTATAAGTTGTCAGGGGAAG
AAGCTCCAAACGTCCCCAAAGATAGCTATGAGGTAGACCCAGCTGCCATTTCTAAAGAAC
TTCTTCAGGGGATCACAGAAACGGCGGAGGAGGCAGAAGGAACTTCTAAATCCAGTTGAG
ACGGTTGATGCTGTGACTCCATTATGCCTTTGTTGACCTGCCAGCCCTTTTGAATCAAAC
ATTTGTTGGCACTAGCTAGCTTCTGTAGTGTTTCCTAGCTTCTATACTTTGACAGTTACC
TCTGCGTACAACGGCTGGTCTGGGGCTAGCCATTCCTGTCTTGTATGCCATGTGTCTTGC
CGTCTCATCAATGAAGCTCATGATGTGAGTAAGCGGCAGTCATTTTGTATGTCAGAAAAA
GTATCTTATATGCGCTGTTTTACCTTGTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_21930 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g28310.1	749	6e-64	protein\|dnaJ domain containing protein, expressed
Brachypodium v1_2	Bradi1g52400.1	750	3e-65
Arabidopsis v10	None