barSeed - Barley Seed Development Database

Probe CUST_39794_PI390587928

Source Contig U35_24922

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39794_PI390587928	Hv_44K_v2	TGAGGTGGCTTAGAATTAAATGAAGAAAGAGAGGGTTGAATATCATATCATGATACCGTA	640	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81078.1	2490	2e-24	1279 - 1338	100	60 / 60	minus	None
MLOC	AK371193	5337	3e-21	1237 - 1296	97	58 / 60	plus	ABC01983 ABC10695 ABC16473 ABC21919 ABC22344 ABC45186
JLOC1	JLOC1_53950.1	1264	8e-25	1036 - 1095	100	60 / 60	plus
Harvest21	ABC24356	768	3e-25	641 - 700	100	60 / 60	plus
Harvest35	U35_24922	768	3e-25	641 - 700	100	60 / 60	plus

Contig Sequence (768 bp)

>U35_24922 768 Hv_44K_v2
CTACGAGGTAGCACCCAGCGGTGAGCTTCCATGTTTAACCTTTCACAGTCCGTTGTGTAC
AGCGAAGTTGAGCCTTGAACGACTTCCTAGTACGATACAGGCCACTATTTTATCAGTTCG
TGTTGTCGGAGGGCGGTCTCCTTTCAAATCTGGAGTCCAAGTTTCTTGTTGGTCGTCTAG
TGCAGATGGTAGTCCTGCTATGCACGAGGTTGTGTTGCTCGATTCTCTTGAAAGAATTCC
CCAAGAATATGAAGAGCTTGATCTAGATGGTTACCTCCCTCTGTCAAGGAAAGTCGTCTC
GGTACAATGTGGTGGAGGATTGGATGTCGTGGTAAAGCCGTATGGGGGGTCTGGTTCTAC
ATCTAGTCATATCTACTTCCCTTCAGAGTATTGCAACATAAGTCAGCGTACATGTTGGGT
TTGTGGCTCTCAGGTGGATATCACTGTTGCTTGGTCCCGGCTTGTCCGCGACAAGATGGA
TCTCTTGATTGACGGATATATTACCCAGGCCTAGTGTGGTGTCTTGCCCATAAAGGCTGT
TGTTAGATCCCTGAATGTGCAACCTTTCAACAATGATGTTAGGCTGGTCGTAATGGTAGT
ATCATAGGTAGTATCATGCATGCCAACTAGACAATTTTGATGAGGTGGCTTAGAATTAAA
TGAAGAAAGAGAGGGTTGAATATCATATCATGATACCGTATCATATTAAATGTTGTGCTA
CTTTGTGTCTTGCATGATAATAAATGACCTAGTCTATGATACTAACAT

Homology of Contig U35_24922 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None