barSeed - Barley Seed Development Database

Probe CUST_39752_PI390587928

Source Contig U35_12961

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39752_PI390587928	Hv_44K_v2	AAAGGTCACTAGCTAGCTAACTCTTTCCTGCCATTGGAGCTCTAGATCGAAAGTATTCGG	10	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375042	2615	3e-22	25 - 80	100	56 / 56	plus	ABC00078 ABC00225 ABC00555 ABC00840
MLOC	MLOC_71878.2	2192	3e-22	461 - 516	100	56 / 56	plus	ABC00078
JLOC1	JLOC1_47789.4	1896	1e-22	161 - 216	100	56 / 56	plus
Harvest21	ABC25416	662	3e-25	11 - 70	100	60 / 60	plus
Harvest35	U35_12961	662	3e-25	11 - 70	100	60 / 60	plus

Contig Sequence (662 bp)

>U35_12961 662 Hv_44K_v2
TAGTGGATCCAAAGGTCACTAGCTAGCTAACTCTTTCCTGCCATTGGAGCTCTAGATCGA
AAGTATTCGGGCGAGAGGGTTAAGCTCGGGCTGCTTGGATGGCTGTCATCGGCACGGCGG
GGGCGGAGGCGCTGATACCGCTGGCGGCGGTGATCGGCATCGCGTTCGCGGTGTTCCAGT
GGTACGTGGTGGCCAAGGTGCCGGTCCCGGCCCACGACGGCGGGGACCTCAGCGCCGCCC
AGAAAGGCCGCAGCGGGCACGATGAGAGTGCGGAGGACGGCGTGGACTACCGGCAGGTGG
AGGCCCGGTGCGCCGAGATCCAGCACGCCATCTCCATCGGCGCCACGTCCTTCCTCTTCA
CGGAGTACAAGTACCTCGCCGTGTTCATGGCTGGGTTCGCGGTGGTGATCTTCATGTTCT
TGGGGTCGGCGCAGCGTTTCAGCACGCGGCCAGAGCCATGCACGTACGACCCCGCGCGGC
TGTGCCGGCCGGCGCTAGCGAACGCCGCCTTCAGCATGATCGCGTTCCTCCTGGGCGCGC
TCACCTCCGTGATGTCCGGGTACCTCGGGATGCGCGTGGCGACGTTCGCGAACGCGCGCA
CGGCGCTCGAGGCTCGCCGCGGCGTGGGGCGCGCCTTCGTCGTCGCGTTCCGGTCCGGCG
CC

Homology of Contig U35_12961 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g06480.1	771	7e-83	protein\|inorganic H+ pyrophosphatase, putative, expressed
Brachypodium v1_2	Bradi2g34930.1	782	4e-78
Arabidopsis v10	AT1G15690.1	770	1e-67	\| Symbols: AVP1, ATAVP3, AVP-3, AtVHP1;1 \| Inorganic H pyrophosphatase family protein \| chr1:5399115-5402185 FORWARD LENGTH=770