barSeed - Barley Seed Development Database

Probe CUST_39736_PI390587928

Source Contig U35_29422

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39736_PI390587928	Hv_44K_v2	TGGACATGACTAATACTATTGTATAAAGCACTGCAAATTTTGCCTTGAATGAAACAGGGT	420	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376879	3935	2e-24	3852 - 3911	100	60 / 60	plus	ABC05490
MLOC	MLOC_42310.1	400	2e-24	309 - 368	100	60 / 60	plus	None
JLOC1	JLOC1_27427.1	405	8e-25	312 - 371	100	60 / 60	plus
Harvest21	ABC28697	486	3e-25	421 - 480	100	60 / 60	plus
Harvest35	U35_29422	486	3e-25	421 - 480	100	60 / 60	plus

Contig Sequence (486 bp)

>U35_29422 486 Hv_44K_v2
CGGGCTTATGCTGGCCTGAACCATATACAAACAAAAATTAAGGGCCTAAGGCAAGAGTAG
CACTGCCATGTGTAGATCATTATTTGATTTTAGTACTTTGAATAGGTCATACCAAAAGAT
AAACTTTCAGATGTGCAGTTCATGGTATCACCCTCACTTTTGATGGCACAAGCGCTCCAT
TTGACGTTCTTCAGAAATGTTCAAGATTTCATTCAAGGAGAGAACAACCATGGTGACACT
CAATAAAGTGAAGCAACCGCTAGCCTTGCAAGAGAGAGAGTAGTCCGGGCTATCATACAA
TGTAAATATGTTAACCGTTGTTTGCAGAATCGCTACAAAATTCATGTTAATTTCTTGTGA
ATGAATAAGGTCTGATTTTTTGTATGTATTTCTATTTCGTGTTGTCTAGGGTTAGCAAGG
TGGACATGACTAATACTATTGTATAAAGCACTGCAAATTTTGCCTTGAATGAAACAGGGT
CTTTGG

Homology of Contig U35_29422 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None